Lottia gigantea (owl limpet): LOTGIDRAFT_130484
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Entry
LOTGIDRAFT_130484 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_130484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_130484
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOTGIDRAFT_130484
Spliceosome [BR:
lgi03041
]
Complex A
U2 snRNP components
U2 related factors
LOTGIDRAFT_130484
Complex B
LOTGIDRAFT_130484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RSRP
ResIII
CdAMP_rec
SR-25
Motif
Other DBs
NCBI-GeneID:
20233081
NCBI-ProteinID:
XP_009063537
JGI:
130484
UniProt:
V3ZXU2
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MCFLSYIYRSYRRRSRSRSRSVSRERKRKKKSRSRSVERKRSRSRDRSRRDRSKDRRRSR
SRSRDRDRRRKRRSRSRSRSRDRNKVKSCSPSKEKVIHREGALTVKDEPLNKEEEQKRLE
MEMQKRRERIEQWRAERKKTKELVPINIAPPTKTWTLEDEDDDDEDVESEEKKAGDADEV
DPLDAYMQNNGTNANGTTVVTTTAPTTGKVTFITAVAKKKAEPIFKGELMESNQDAMEYS
SEEEEEGIDVTMANIDKMKKKDLVVVDHTRIYYAPFRKNFYVDWKRLIGIAKTGSGKTLA
FLLPMFRHILDQPPLDEEDGPICVILTPTRELALQIASECKKFAKPLGLQTVCVYGGTGI
SEQIAELKRGCEIIVCTPGRMIDMLAANNGRVTNLRRCTYVVLDEADRMFDMGFEPQVMK
IIDNVRPDRQTVMFSATFPRQMEALARRILDKPIEVQVGGRSVVCQDVQQHVILIDEDQK
FFKLLELLGLYHTEGSALVFVDKQEHADDLMKDLMSHSYPCLSLHGGIDQYDRDSTIVDF
KNGVVKLLIATSVAARGLDVKQLDLVVNYDCPNHYEDYVHRCGRTGRAGNKGQAYTFITP
EQERYAGDIIKSLELSGATVPADVQLLWTSYIERAKAEGKKVKSSSGFKGKGFKFDETEA
QLADDRRKLQKAALGLQDSDDEDAGVDIDQKIEDMFASVKRVTDVAKPIANLATQQASTN
LEKLELAKRLAARINMSKNLGPDAQDITQQAAMAFLKGDTNAPQVKSKTIAEQMAEKINA
KLGYRPQVEEDKEAENAEETFKCYEEELDINDFPQTARWKVTSREALAQICEYSEAGITV
RGTYISGKRELQEGERKLYLAIEGTSELSISKAKKEVTRLIKEELIRLVSLLSVGILRTY
IFKREGHQSLLISNEINLLQFATYYILRLEPCLVFFYQIIFRSEYP
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtgttttttgtcttatatttacagatcttacagacgtcgatcaaggtcaagatcaagg
agtgtttcacgagaaagaaaaagaaaaaagaaaagtcgttctagaagtgttgaaagaaaa
cgatcacgatccagagatagatcaagaagagatagatctaaagatagaagaagatctaga
agtagatctagagatagagacagaagaagaaaaagaagatctagatcacgttctcgttct
agagatagaaataaagtgaagagttgttcaccaagtaaagagaaggttattcacagagag
ggtgcattaacagttaaagatgaacctcttaacaaagaagaagaacagaaaagattagaa
atggagatgcagaaacgaagagaaagaatagaacaatggagagcagaaagaaagaaaact
aaagaattagtgcctataaatatagcaccaccaactaaaacatggacgctagaagatgaa
gatgatgatgatgaagatgtagaatcagaagagaaaaaagctggtgatgctgatgaagtg
gacccattagatgcttacatgcagaacaatggtactaatgctaatgggacaactgtagta
actaccactgctcccactactggtaaagtaacatttattacagcagtagccaaaaagaaa
gctgaacctatttttaaaggtgaattaatggagagcaatcaagatgctatggagtattca
tctgaagaagaggaggaaggtatagatgtgactatggctaatattgataaaatgaagaaa
aaggacttagtagtcgtggatcacacaagaatttactatgctccattccgtaagaatttt
tatgtggactggaagagattaataggtatagctaaaacgggtagtggtaaaacactggca
ttcttattacccatgttccgtcatatactagatcaacctccactagatgaagaagatggt
cccatctgtgttatattgacccctactagggagttggcattacaaatagcatcagaatgt
aagaagtttgctaaacctcttggattacagacagtatgtgtttatggtggtacaggtata
tctgaacaaatagctgaattaaaacgaggttgtgagattatagtctgtacaccaggcaga
atgattgacatgttagcagctaataatggaagagtaactaatttaagaagatgtacttat
gttgttcttgatgaagctgatagaatgtttgatatgggatttgagccccaggtaatgaag
attatagataatgtaagacctgatagacaaacagtcatgttttcagcaacatttcccaga
cagatggaagctctagctcgtagaatactagataaaccaatagaggtacaagttggtggt
agaagtgttgtttgtcaagatgttcaacaacatgttatattaattgatgaagatcagaag
ttttttaagttattagaattattaggtttataccatactgaaggatcagctctagtattt
gttgataaacaagaacatgctgatgatctgatgaaagatctaatgagtcattcttatcca
tgtttatcattacatggtggtatagatcaatatgatagagatagtactattgttgatttt
aaaaatggcgttgtcaaattactgatagcaacttcagtagcagctagaggtttagatgtt
aaacaactagatttagtagtcaactatgactgtcctaatcattatgaagattatgtacat
cggtgtggacgaactggtagagcaggaaataaaggacaagcctatacatttattacacca
gaacaagagagatatgctggtgatattattaaatcattagaattatctggagctactgta
ccagcagatgtacaactattatggacaagttatattgaaagagctaaagcagaaggtaaa
aaagtcaaaagttccagtggttttaagggtaaaggttttaaatttgatgaaactgaagct
cagttagctgatgatagacgtaaattacagaaagcagctttaggtttacaagattctgat
gatgaagatgctggcgtagatattgaccagaaaatagaagatatgtttgctagtgttaaa
agagtaactgatgtagctaaaccaatagctaacctggctactcaacaagcttcaactaat
ctagaaaaattagaattagctaaacgtttagcagctagaatcaacatgtctaagaatcta
ggacccgatgcacaagatattactcaacaggcagccatggctttcttaaagggtgatact
aatgctccacaagttaagtccaagacgatagcagagcagatggcagaaaagattaatgct
aaactaggatacagaccacaagttgaagaagacaaggaagctgaaaatgctgaagaaaca
tttaaatgttatgaagaagaacttgatattaatgacttcccacaaactgccagatggaaa
gttacttcgagggaagcgttggctcagatctgtgagtattcagaagctggtattacagtt
cgtggcacctatatatctggtaaaagagaattacaggaaggagaaagaaagttatatcta
gctatagaaggtaccagtgaactgtctatcagtaaagctaagaaagaagttactagatta
attaaagaagaattaataagattggtgagtctcctttcagttgggatcttgaggacctat
attttcaaaagagaggggcaccagtcattgctcatttcaaatgaaatcaatcttttgcaa
tttgctacttattacattctgaggctagaaccttgtttagtttttttttatcaaataatc
ttcagatcagagtatccctaa
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