Lactobacillus gallinarum: AO203_11440
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Entry
AO203_11440 CDS
T04115
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lgl
Lactobacillus gallinarum
Pathway
lgl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AO203_11440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgl03400
]
AO203_11440
Enzymes [BR:
lgl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AO203_11440
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AO203_11440
DNA repair and recombination proteins [BR:
lgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AO203_11440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Prim_Zn_Ribbon
NFACT_N
Zn-ribbon_8
zf-TFIIB
zinc-ribbons_6
OrfB_Zn_ribbon
Auto_anti-p27
TF_Zn_Ribbon
Zn_Tnp_IS1595
ZNF512_C2H2
HMBD
Motif
Other DBs
NCBI-ProteinID:
ALJ24300
LinkDB
All DBs
Position
complement(2259674..2260504)
Genome browser
AA seq
276 aa
AA seq
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MPEMPEVETVRRTLIPLIKGKTIEKVILWYPKIVATDHEKFLSELPGKKIIDIDRYAKYL
LIRLSDNLTIVSHLRMEGKYHLTTSDAPKDKHDHVEFIFTDGTALRYNDVRKFGRMQLIL
TGTERQTTGIGKLGYEPNSSEFTSEYLVNGLKRKKKNIKNTLLDQSVVAGLGNIYVDEVL
WRTKIHPLSQANKIPAEKVIELHDQINQIITEAIKLQGTTVHSFLNANGEVGGFQSKLQV
YGHVGEPCPVCGTKFEKIKVNGRGTTFCPHCQVIYK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaatgccggaagttgaaacggttcgaagaactttgattcctttaattaaagga
aaaactattgaaaaagtgattttgtggtatcccaaaatcgtagcgacagatcatgaaaag
tttttatctgaattacctggtaaaaaaatcattgatattgatcgttatgctaagtatttg
cttattcgtttgagtgacaatttgacgattgtttctcatttgcgaatggaagggaagtac
catttaaccacatctgatgcgcctaaagataaacatgatcatgttgagtttatttttacg
gatggaacagccttacggtataatgacgtgcgcaagtttggtcggatgcaattaatttta
actggaactgaaaggcaaactacagggattggcaaattaggttatgaaccaaatagttct
gaatttacatcagaatatttggtaaatggcttaaaacgtaagaagaaaaatatcaaaaat
actttgcttgaccagtcagtagtggccggccttggcaatatttatgttgacgaagtcttg
tggcggactaagatccatcccttgagtcaggctaacaaaatccctgctgaaaaagtaatt
gaattgcatgatcagattaaccaaattattaccgaagcgattaaattgcaaggtacgact
gtccattcctttttaaatgcaaatggtgaagttggcggctttcaaagcaagttgcaagtc
tatggccatgtaggtgaaccttgtccggtttgcggcacgaagtttgaaaaaattaaggtt
aatggtcgaggtaccactttttgccctcattgtcaggtgatttataaatga
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