Legionella hackeliae: LHA_2124
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Entry
LHA_2124 CDS
T03809
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lha
Legionella hackeliae
Pathway
lha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LHA_2124 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lha03400
]
LHA_2124 (mfd)
Enzymes [BR:
lha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHA_2124 (mfd)
DNA repair and recombination proteins [BR:
lha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LHA_2124 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF1474
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CEK11148
UniProt:
A0A0A8UR15
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All DBs
Position
I:2227131..2230652
Genome browser
AA seq
1173 aa
AA seq
DB search
MFYELLYSILLHLKFRGIRHSMVKLVLNLPKIEKKQAWGQLYGCSLPLAIAEFCQQKTGI
TLLVTPDNLSAGQLLDELAFFLNKENSPELLYFPDWETLPYDQFSPHQDIISERLACLSR
LQQVSNAIVISSTNTLMHRLCPPQFLHHHAFVLKEGQTLNLELFRHQLQEAGYHCVNKVL
EHGEFAIRGAIIDVYPMGSVVPFRIELFDDVVDSLRQFDTETQRTIAKINDIQVLPAREF
PLNERSITLFRRAFREQFSGNPSQCPVYEAVSEAQFPSGIEYYLPLFFEQTATFFDYLPK
DASICLIEDIPEHAEQFWQEVETRYGQRSYDITRPILKPASCFLTPTELLTHANQYQQIR
CHHETVDRKGIVFNFNIAKAPSLPIERQSENPLAKFCAYLTDKDKRFLIVAESAGRREVL
LDLLKQASIIPKVQSSWKDFLNDDAPINITTGSLIYGTELTEQRLAIIVEAQLFGEQAIP
QRRSSQKTVDPDLIIRDLAELRIDTPVVHLQFGVGRYKGLQTLDSNGTMNEFLVLTYAGD
DKIYVPVTSLHLISRYTGMDSEHAPLHKLGSDQWSKEKKKAAEKIHDVAVQLLEVYAKRE
AKPGHVYQFPQNEYKRFASGFPFTETTDQLRAIEQIVKDMESSRPMDRLICGDVGFGKTE
VAMRAAFIAVQNGKQVCVLVPTTLLAAQHFETFRDRFADFPVNIELLSRFRSSKESEKVI
ESLKSGQVDIVIGTHKLFSQETNFKNLGLLIIDEEHRFGVKQKEHIKSLRTHIDILSMTA
TPIPRTLNMAMAGIRDISLIATPPAKRLAIKTFWQEKSDYILREAILREILRGGQVYFLH
NNVQTLERVCQDLQTLVPEAKVRGAHGQMRERELERIMSDFYHHRFNVLVCTTIIETGID
IPTANTIIIDRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNEKLLTSDAVKRLEAIVSL
EDLGAGFTLATHDLEIRGAGELLGEDQSGNMQAIGFSLFMEMLDKAVNDLKAGKTPELAT
PMQQGPEIDLRISAILPDDYIADIHTRLIMYKRLANAKDKQQLRDLQVEMIDRFGLLPKP
AKNLLLVTELKLLATKLGINKINAAQQQGKLEFSEQPVIDPAVLINLIQVHAKRYQLDGP
TRLRFTLDNTSAEERIHEIQSLLIKLANKEMEW
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgttttatgaactactctatagtatactactgcacctgaagtttagaggtatccggcat
tctatggtcaaactagtactcaaccttccaaaaatcgaaaaaaagcaagcctgggggcag
ttgtatggctgcagtcttcctttagctatcgctgaattttgtcaacaaaaaacaggcata
acgctattggttactcctgacaacttaagtgcaggacaacttttagacgagctggctttt
ttcctaaataaagaaaattcacctgaattactctattttccagattgggagacgctaccc
tatgatcagttttcacctcatcaagatataatttctgaacgattagcctgtttaagccgc
ctgcaacaagtttctaatgctattgttatcagttccactaatactttaatgcatcgtttg
tgtccaccgcagtttttacaccatcacgccttcgtattaaaagagggacaaacattaaac
ctggaactcttccgccatcaattacaagaagccggctatcattgcgttaacaaagtgtta
gagcatggtgagtttgcaattcgtggtgcaattattgatgtttatccaatgggaagtgta
gttccttttcgcattgagttatttgatgatgttgttgatagcttacgtcaatttgacact
gagactcaacgtactattgctaaaattaatgacatccaagttttacctgctcgagaattt
cctctgaatgagcggagtattacactctttcgcagagcatttagagaacaattttctggc
aacccaagccaatgtccggtgtatgaagcagtgagtgaggcacaattcccctcaggaatt
gagtattatttgcctttgttttttgagcaaaccgccacttttttcgactacttacccaaa
gatgcaagtatttgtctgattgaagacattcctgagcatgccgagcaattttggcaagag
gtagaaacacgttatggacaaagaagttatgacattactcgccctattctcaaaccagct
agctgttttctcacaccaacagaattactcactcatgctaatcagtatcaacaaattcgc
tgtcatcatgaaaccgttgatagaaaaggcatcgtatttaattttaatattgccaaggcc
ccatcgttacctatcgaacgacagtcagagaacccactagcaaaattttgtgcctattta
actgataaagataaacgctttttaatcgttgcagagagtgccggaaggcgcgaggtttta
ttagatttactgaaacaggcctccataattcctaaagtccaatcctcatggaaagatttt
cttaatgacgatgcacctattaacattactacaggttcgctcatttatgggactgaatta
acagagcagcgcttggcaattatcgtggaagcgcaattgtttggggaacaagcaatacct
caacgacgcagtagccaaaaaacggtcgatccagacttaattattcgagatttagctgaa
cttcgaattgatactcctgtcgtccacttacaatttggggtaggacgctataaaggatta
caaaccctggatagtaatggcacgatgaatgaatttctggtcttaacttatgcgggcgat
gataaaatttatgtgcctgtaacttcgctgcatttaattagccgatatacaggcatggac
agtgagcatgcgcctctgcacaaattaggttctgaccaatggagtaaagagaaaaagaaa
gcggcggaaaaaattcatgatgtggctgtacaattgcttgaggtttatgccaagcgtgaa
gctaaacctggacatgtttatcaattcccgcaaaacgagtataaacgctttgccagcggc
tttccatttacagaaacaaccgatcagttacgcgccattgagcaaattgttaaagatatg
gaatcttcccgtcccatggatagacttatctgcggtgatgttggttttggaaaaaccgaa
gttgccatgcgagcagcatttattgccgtacaaaatggaaagcaagtttgcgtgttagtg
cctactactttactcgctgcccagcattttgaaacattcagggatcgttttgcagatttc
cccgtaaatatcgaattactctcacgttttcgtagtagtaaagaatcagaaaaagtgatt
gagtcacttaaaagtgggcaagtcgatattgtcattggtactcataaattgttctctcaa
gagactaattttaagaatttaggcttgcttattatcgatgaagaacatcgttttggcgtt
aaacaaaaagaacatattaaatcattacgtacccatattgatattttatcaatgacagca
accccgattcccagaacattaaatatggccatggctggtatacgcgatatctctctaatt
gcgaccccgccagcaaaaagattggcgattaaaacgttctggcaagaaaaaagtgattac
attttacgcgaagcaatactgcgtgaaattttgcgcggcggccaggtttattttcttcat
aataatgtgcaaaccctcgagcgggtttgccaggatttacaaaccctggtaccagaagct
aaagttcgcggtgctcatggtcagatgagagagcgagaattagagcggattatgtctgat
ttttatcaccatcgtttcaatgtgctcgtttgcacaacgattattgagacaggaatcgat
atccccacggcaaatactattattattgatagagcagataaatttggcttagcacaactt
caccaattacgtggtcgtgtaggtcgctcacatcatcaagcctatgcctatttattaacc
cctaatgaaaagttattaacttctgacgcagtaaaacgtcttgaagctattgtttctttg
gaagacttaggtgcaggattcacacttgctacgcatgatctggaaattcggggggctggt
gagctcttaggcgaagatcaaagtggtaacatgcaagctatcggcttcagtttatttatg
gaaatgcttgataaagcggtgaatgatttaaaggcgggcaaaacacccgaattggcaacc
cccatgcaacaaggtcctgagatcgatttgcgtataagtgccatcctccctgatgactat
attgctgatatacatactcgtttgattatgtataagcgtttggcgaatgctaaagataag
cagcaattgcgcgatttacaggtagagatgattgaccgattcggtttactaccaaaacct
gccaaaaatcttttactcgttaccgaacttaagctgttagctacaaaattagggattaat
aaaattaatgccgcacaacagcaagggaaacttgaatttagtgaacaaccggtaattgat
ccagccgttttaatcaatcttatccaagtccatgccaaacgttatcagcttgatggtcct
actcgcctgagatttacgttagataatacttctgctgaagagcgtattcatgaaattcaa
tccttgctgattaaattagcgaataaagaaatggaatggtaa
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