Linepithema humile (Argentine ant): 105673334
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Entry
105673334 CDS
T04898
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105673334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhu03021
]
105673334
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105673334
Transcription machinery [BR:
lhu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105673334
RNA polymerase I system
105673334
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
105673334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
Spt5-NGN
Spt5_N
CTD
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
105673334
NCBI-ProteinID:
XP_012224305
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSDSEGASDAGSAGGRSRSVSRSRSPSRSSGSRSISRSRSRSRSPSGSEKADEAEEVRSG
DEEAVEPEEEPEGEDLDNSSEYDEEEEEDDDRPRKKKKKDRFGGFIIDEAEVDDEVEDDD
EWEEGAQEIGIVGNEVDELGPTAREIEGRRRGTNLWDSQKEDEIEEYLRKKYADESIAAR
HFGDGGEEMSDEITQQTLLPGVKDPNLWMVKCRIGEEKATVLLLMRKFITYQFSTEPLQI
KSVVAPEGVKGYIYIEAYKQPHVKAAIENVGNLRMGIWKQQMVPIKEMTDVLRVVKEQTG
LKAKQWVRLKRGIYKDDIAQVDYVDLAQNQVHLKLLPRIDYTRPRGALRTAQSESEALKR
KKKRRPVAKPFDPEAIRAIGGEVTSDGDFLIFEGNRYSRKGFLYKNFTTSAIIAEGVKPT
LSELEKFEEAPEGVEIDVSGTPVTGTSGKEDQAVAHSFSNGDNVEVCEGELINLQGKIVS
IDGNMIMVMPKHEDLKEALEFQASELRKYFTQGDHVKVVAGRYEGDTGLIVRVEQNRVVL
FSDLSMHELEVLPRDLQLCSDMATGVDSLGQFQWGDLVQLDTQTVGVIVRLERENFHVLS
MHGKVVEARPQGLTKRRENRNAVALDSQQNTIQKKDIVKVVDGPHAGRGGEIKHLYRSFA
FLHSRMFVDNGGIFVCKTRHLQLSGGNKANSINSMSPVAGFMSPRIASPIHPSGGGFGRG
GGGGGRGRGRGGGGARRDRELIGTTIKITGGPYKGNVGIVKDATETTARVELHSTCQTIS
VDRSHIANVGVPTKDGGFSSYNRTPAYGAGGQTPMYARDGSKTPMHGSQTPMYENGSRTP
HYGSMTPSHDGSRTPGQSGAWDPAVTNTPARSNDFDGYSMEEGGSPGYAPGYPPTGGPFT
PQTPGTMYGSEQSFSSYQPSPSPAGSATASPSPAGYVATPSPSGTGYTTSPHGAFATPSP
MGYSPMTPGSPYNPQTPCGGIDTSASSISGSDWQTTDIEVRIRDSHDDPALAGQQAVIRG
ISGGMCTVYLPTEDRVVNLVCEQLEPVVPSRGDRVKVILGEDREAVGTLLSIDNQEGVVK
LNTEEIKFLQLRFLCKMKASST
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcagaaggtgccagcgatgcgggaagcgctggaggaaggtctcggagtgtc
tctcgcagtagaagtccttctcgaagctcgggatctagaagtatatctaggtctcgatca
cgttcccgatcaccatctggctctgaaaaggcagacgaggcagaagaagtcaggtcggga
gatgaagaagctgtggaaccagaagaggaacctgaaggagaagacttggataatagcagt
gaatatgatgaggaagaagaggaagatgatgacagaccaagaaagaaaaagaagaaagat
agatttggtggctttattatagatgaagctgaagtagacgatgaagtcgaagatgatgat
gaatgggaggaaggtgcccaagaaattggtattgtaggaaatgaagtggatgaattagga
ccaactgcgcgtgaaattgaaggacgacgtaggggtacaaatctctgggattcgcagaaa
gaagacgaaattgaagagtatctgaggaaaaaatatgctgatgaatcaatcgctgctcgt
catttcggtgatggcggtgaagaaatgagtgatgaaattactcagcaaacgctattgcct
ggtgtgaaagatcctaatttgtggatggtgaagtgtcgcataggagaagaaaaagccact
gtactcttattgatgcgaaaatttatcacatatcaattttcgactgaacctctgcagata
aaatctgtcgtggcgcctgaaggtgttaagggttacatttacatagaggcttataagcag
ccgcatgtgaaagctgctatcgaaaatgtcggaaatctcagaatgggtatatggaagcaa
caaatggtgccgattaaagagatgacggatgtgctacgagtagttaaagagcagactggt
ttgaaagccaagcagtgggtccgtttaaaacgaggcatttacaaagatgacatagctcag
gtcgattatgttgatttggcgcaaaatcaagtgcacttgaaattactgccgagaatcgat
tacactagaccacgcggtgctttaagaacagcacagagcgaatccgaagcattgaaacgc
aagaagaaaagacgaccagtggccaagccatttgatcctgaagcgatccgcgctatcggt
ggagaggtcaccagcgacggagatttccttattttcgaaggaaatcgatacagtcgtaaa
ggctttctttataagaattttaccacaagtgctattatcgcggaaggtgtcaagcccaca
ctttccgaattagagaaatttgaagaagcgccagaaggtgttgagatagatgtaagtggt
acgccagtaactggaacttccggaaaagaagatcaagctgtagcccattcctttagcaac
ggagataatgtggaagtgtgcgagggagaattgattaatctgcaaggaaaaattgtttcc
atagatggaaacatgattatggttatgccaaagcacgaagatctaaaagaagccttggaa
ttccaagcttcggagttacgaaaatactttacacagggcgaccacgttaaggtcgtagca
ggaagatacgaaggtgacacgggtttaattgtcagagtggagcaaaatagagtagtcttg
ttttctgatttatcgatgcacgaacttgaggtacttccaagggatctacaattgtgctct
gacatggcgaccggtgttgacagcctaggacaattccagtggggcgatttggtgcagctt
gatacacaaacagtcggtgtaatcgtgcgattggaacgcgagaatttccacgtgctctcc
atgcacggaaaagtggtcgaggccagaccacaaggtctcacgaagcgccgagaaaatagg
aatgcggtcgctttagactcgcaacagaacacgatacagaagaaggacatcgtgaaagtg
gtcgatgggccgcatgcaggtcgaggtggcgagattaaacatctatacaggagctttgct
ttcctacactcgcgaatgtttgtcgacaacggtggaatattcgtatgcaaaaccagacat
ctacagctatcgggtggaaataaggcaaattctataaattctatgtcgccagtggcagga
tttatgtcacctaggatcgcctctccgatacaccccagcggaggcggttttggacgaggc
ggcggaggaggtggaagaggcagaggtcgcggcggcggcggtgcgagacgcgacagggaa
ttaatcggaaccaccatcaagataacgggtggaccgtacaagggaaatgtaggtatcgtg
aaagacgcgacggaaaccacggcgcgcgtggagctgcactccacttgccaaacgatttcc
gtcgaccgctctcatatagcaaacgtcggcgttccgacgaaggacggcggcttcagcagc
tacaacaggactccggcttatggagcaggcggacagactccgatgtacgctcgggacgga
tcgaaaacacctatgcatggttcccaaacacctatgtacgaaaacggttctcgcactcct
cattacggttcgatgacaccgtcccacgatggttcgcgaacgccaggacaatcaggagcc
tgggatccagcagtcacgaatacacccgccaggtcaaacgatttcgatggctacagtatg
gaggagggtggctcgcccggctacgcgcccggatatccacccactggcggaccgttcact
ccacagactccaggcaccatgtatggatcggaacaaagcttcagttcgtatcaacctagt
cctagtcccgcgggcagcgccaccgcgagtccgagtcctgcgggctacgttgctactcca
tctccaagtggtaccggatacaccaccagtccacatggagcattcgcaacaccttctcca
atgggttacagtcctatgacaccgggtagtccatataatccgcaaacaccttgtggagga
atagataccagcgctagttcgataagcggctcagattggcaaacaacagatatcgaagta
cgcatccgcgattctcatgatgatcccgcacttgctggacaacaagctgtcattcgtgga
atttctggcggcatgtgcacagtttatttacctaccgaagaccgtgttgtgaatcttgtg
tgcgagcaattggaacctgtagtaccatcgcgtggcgatcgagtcaaagtaattctagga
gaagatcgtgaagccgtcggcactttactttcaatcgacaatcaagagggtgtggtgaaa
ctcaatacggaggagatcaaattcctgcagttacgatttttgtgtaaaatgaaagcatct
agtacataa
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integrated database retrieval system
