Listeria ivanovii subsp. ivanovii PAM 55: LIV_1873
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Entry
LIV_1873 CDS
T01623
Symbol
nth
Name
(GenBank) Putative endonuclease III (DNA repair)
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
liv
Listeria ivanovii subsp. ivanovii PAM 55
Pathway
liv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
liv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LIV_1873 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liv03400
]
LIV_1873 (nth)
Enzymes [BR:
liv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LIV_1873 (nth)
DNA repair and recombination proteins [BR:
liv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LIV_1873 (nth)
Prokaryotic type
LIV_1873 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
HHH_5
EndIII_4Fe-2S
RecR_HhH
DUF2400
HHH_8
DUF4487
Motif
Other DBs
NCBI-ProteinID:
CBW86358
UniProt:
G2ZC53
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All DBs
Position
complement(1979318..1979977)
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AA seq
219 aa
AA seq
DB search
MLSNKQTVLCVEEMAKMFPAAHCELIHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYH
KPEDYLAVSLDELMDDIRSIGLYRNKAKNIQGLSQKLLTEFNGEVPQTHAELESLPGVGR
KTANVVLSVGFGVPAIAVDTHVERISKRLGICRRKDSVVEVEETLKRKLPEELWSDAHHY
MIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
ttgctatctaataaacaaactgtcttatgcgttgaagaaatggctaaaatgttccctgcg
gctcactgtgagctaatccataaaaacacgtttgaactcttagttgctgtggttttatct
gcccagtgcacagatgtattagtgaaccgagtaacggcttctctttttgaaaaatatcat
aaacctgaagattatttagctgtatcgcttgatgaattaatggatgatatccgttccatt
ggtttatatcgaaataaagctaaaaatattcaaggactatcacaaaagttgctaactgag
tttaacggagaagtaccacagactcatgcagaacttgaaagcttacccggcgttggtaga
aaaacagccaatgttgtactttcggttggttttggtgtgcctgctattgctgtggatact
cacgtggagcggattagtaaacgacttggtatttgcagacggaaagattcggtagtagaa
gtggaagaaacgttaaaacgaaaattaccggaagaactatggtcggacgcgcaccattat
atgattttcttcggtagatatcattgcaaagcgcgaaacccagaatgtccgacatgtcca
cttctttatttatgccgcgaagggaaaaaacaagcgaaagtgaggggatttgatggctga
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