Lichenihabitans sp. PAMC28606: LGH83_17130
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Entry
LGH83_17130 CDS
T07621
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LGH83_17130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_17130
Enzymes [BR:
liz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LGH83_17130
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LGH83_17130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UDL96749
LinkDB
All DBs
Position
complement(3627520..3628974)
Genome browser
AA seq
484 aa
AA seq
DB search
MYRIDLDSHVDLDGWRVAARRLAEADIPPSEILWRTGEQDGDLFVEAIQNNEPPEPSPGH
KPLSVPRRFLELAELAVCHRDPERFTLLYRLLLRFQSEPRLIDIATDDDVFRLEGMAKAV
RRDRHKMTAFVRFKKVEAADGPAYVAWFEPEHHIVALTVPFFVDRFANMRWSIITPQLSA
RWDGLALTFEPGGSKADVPDDEAGDDLWRTYYANIFNPARLKIGAMKREMPVKYWKNLPE
SSLITSLIRSAQGKENAMVENPQVAPPKRAEIIAQQRVAKAEPRPSHEAGTLEALRDEAR
SCQRCPLYRDATQTVFGEGLASADLVFVGEQPGDREDLAGKPFIGPAGALFDRALAEAGI
DRQRAYVTNAVKHFKFEPRGKRRIHKKPGIAEIDACRWWIEQELGALKPKLTVALGATAV
RSLTGKSASILSLRGQVIDSPLIGPVLVTVHPSFLLRLPDEDQQRVEYDRFVADLRLARD
AAAG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atttatcggatcgatctcgacagtcacgtcgatctcgacggatggcgtgtcgcagcccgg
cgattggccgaggcggatattcccccgagcgaaattctatggcgaaccggcgagcaggat
ggcgatctcttcgtggaggccatccaaaacaatgaaccacccgagccgagtcccggccac
aagccgctgagcgtgccgcgtcggtttttggagctcgccgaactggcggtttgccaccgc
gatcccgagcgctttacgctgctgtatcgactgttgttacgattccaatccgagccccgg
ctgatcgacatcgcgacggacgacgatgtctttcggctagaaggaatggccaaggcggtg
cgccgcgatcgccataagatgacggcctttgtgcgcttcaagaaagtagaggcggcggat
gggccagcttacgtggcttggttcgagcccgaacatcacatcgtcgccctcacggtcccc
ttcttcgtcgaccggttcgccaacatgcgctggtcgatcatcacgcctcagttaagcgcg
cgctgggacgggctcgcgctcacgttcgagccgggcggcagcaaggccgatgtgcccgac
gatgaggcaggcgacgatctctggcgaacctattacgccaacatcttcaatccagctcgt
ctgaagatcggggccatgaagcgcgaaatgccggtgaaatattggaagaacctgccggaa
agcagcctgatcacgtccctgatcaggtcagcccaaggcaaggagaacgccatggtggag
aacccgcaagtcgcgccccccaagcgagccgagatcatcgcgcagcagagagtggcgaag
gcggagccgcggccaagtcacgaggcagggacgctggaggcgttgcgcgacgaagccagg
agctgtcaacgctgtcctctctatcgggacgcgacccaaacggtgttcggggaaggcctc
gccagcgccgatctcgtcttcgtcggcgaacagccgggcgatcgggaggacctggccggc
aagccgttcattgggccggcaggcgcgctgtttgaccgggcgctcgccgaggccggcatc
gatcggcaacgcgcctatgtcaccaatgcggtcaaacatttcaaattcgagccgcggggc
aagcgtcgcatccacaagaagcccgggatcgccgagatcgatgcgtgccgctggtggatt
gaacaggaacttggcgccctcaaaccgaaactgacggtggcgctcggcgcgacggccgtg
cggagcctgaccggcaagagcgcctcgatcctcagcctgcgaggacaagtgatcgactcg
ccgctaatcggccccgtgctggtcacggtgcacccgtccttcctgttgcgactgcctgac
gaggaccagcaacgggtcgaatatgatcgcttcgttgccgatcttcgcctggcgcgcgat
gccgccgcaggctag
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