Lotus japonicus: Lj6g3v0962610.1
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Entry
Lj6g3v0962610.1 CDS
T04348
Symbol
Lj6g3v0962610.1
Name
(Kazusa) -
KO
K14409
protein SMG7
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Lj6g3v0962610.1 (Lj6g3v0962610.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
Lj6g3v0962610.1 (Lj6g3v0962610.1)
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
Lj6g3v0962610.1 (Lj6g3v0962610.1)
mRNA cycle factors
Common to processing body (P body) and stress granule
Lj6g3v0962610.1 (Lj6g3v0962610.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
LinkDB
All DBs
AA seq
976 aa
AA seq
DB search
MMIIQTDKMAAPSSRERAQRLYDKNLELENKRRRSAQARVPSDPNAWQQMRENYEAIILE
DHAFCDQHNIEYALWQLHYKRIEEFRAYFSAALSSTSSNSSQGGKGPARPDRITKIRLQF
KTFLSEATGFYHDLIMKIRAKYGLPLGYFEDSENRIVMEKDGKKYADMKKGLLSCHRCLI
YLGDLARYKGMYGEGDSLNREFTAASSYYFQAASLWPSSGNPHHQLALLASYSGDELVAI
YRYFRSLAVDSPFTTARENLIVAFEKNRQSFAQLPGDAKSLAVKEPSGRLAGKGRGKVEA
KLATRGTGVDTSPRADGASSIQETYKFFCTRFVRLNGILFTRTSLETFTEVLALVSTGLR
ELLSSGQDEELNFGSDISENRLAIVRIVCILVFTVYNANKESEGQTYAEIVQRAVLLQNA
FTAAFELMGYIIERCAELSDPSSSYLLPGILVFVEWLACYPDLAKGNDLDENQESLRSKF
WNHCISFLNKLLSVGPVSVFDDEEDTCFNNMSRYEEGETENRLALSEDFELRGFIPLLPA
QTILDFSRKHSLGSDGDKERKARVKRILAAGKALASVVLVDKTMIYFDSKTKKFLIGVQP
QSSDDFVQAAYSVIQTAEESQEKPAADKSKVEVVQSNQHQYMEGDEDDEVIVFRPMVSEM
RADVAGSSWTPHEGMEPVLKASGGDLKFHVNSTSNPLNNLHHQTMPISVSGMIPQHLQSV
QPHTSRWLDEEISLANNLKGLGLFENGHVMKPSLQEAIGISNHVGLPIPIQQSIGVDTNV
FHGLSKASESVVPSKIDAIASSGVVSDAFAVKTSAMQPGMRKAPAPVSRPARHLGPPPGF
NHVPSKQSIEFTTSDSMSGNPILDDYSWLDGYQLQSSTKGLSSNGSLAYSQSNSYQLSNN
GLNGNISFPFPGKQVPSVPLQVEQQNVWQDYQPYELLNSHHDQQLQPQQLTTGTQQFSPL
PEQFQGQSIWTGRYFV
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgatgataatacagacggataaaatggctgctccttcgtcacgggagcgtgcacagcgc
ctctatgataagaacctcgaattggagaataagcgccggaggtcagctcaggcacgggtc
ccatcagatccgaatgcatggcaacagatgcgtgagaactatgaagcaataattcttgag
gatcatgctttctgtgatcagcacaatattgaatatgctctctggcagttgcattataag
aggattgaggagtttagggcatatttcagtgctgctctttcttctaccagctcaaactca
tctcagggagggaaaggccctgcacgtcctgatcggataactaaaataaggctgcaattc
aagacttttctttcagaggcaactggattttaccatgaccttattatgaaaattagagca
aagtatgggcttccccttggttactttgaggattcagagaatcggattgtgatggagaaa
gatggaaaaaaatatgctgacatgaagaaaggtttattatcttgtcaccgctgtttaata
tacttaggtgatcttgctcgttacaaaggaatgtatggtgaaggtgactcattaaaccgg
gagttcacagcagcttctagttactactttcaagctgcatctctttggccttcaagtggg
aatccacatcatcagcttgctttattggcttcatattccggggatgagctggtggctatt
tatcggtattttcgtagtctggccgtggatagtccatttacaactgcaagagagaacttg
atagttgcatttgagaagaatcgtcaaagtttcgctcagcttcctggagatgctaaatct
cttgcagtcaaagaaccttctgggcgactagctggcaaaggaagaggaaaagtggaagca
aaacttgcaacaaggggtactggtgttgataccagtcctagagcagatggagcatccagt
atacaagagacttacaaattcttctgtactcggtttgtccggctaaatggaatattgttt
acacgaacaagcctcgagaccttcactgaagttcttgctcttgttagcactggtctgcgg
gaacttctgtcttcagggcaagatgaggagctgaattttggctctgatatttctgagaat
agacttgccattgtcagaattgtctgcattcttgtatttacagtttataatgcgaataag
gaatctgaaggtcaaacttatgcagaaattgttcagcgtgctgttctgcttcagaatgca
tttactgcagcttttgaattgatgggttacataatagagagatgtgcagagctgagtgat
ccttcttctagttatctcttacctggcattctggtttttgttgagtggttggcttgttat
ccagatcttgctaaaggcaatgatttggatgagaatcaggaaagtttgagatcaaaattt
tggaatcattgtatatccttcttgaataaattgctttcagttgggcctgtgtctgttttt
gatgatgaagaggatacttgctttaataacatgagcagatatgaggaaggggaaactgaa
aaccgacttgctttgtcggaggactttgagttaaggggatttattccgcttctccctgca
caaaccatcttggatttttcaaggaagcattcccttggaagtgatggtgataaggaaaga
aaagcccgggtcaaaagaattttagctgcagggaaggctttagcaagtgttgttctggtt
gataaaacaatgatatattttgattcaaagacaaagaaatttctcattggtgttcagcct
caatcctcagatgattttgttcaagccgcctattccgtcattcagaccgcagaagaatca
caagaaaaaccagcagcagataaatcaaaggtggaagttgttcagtcaaaccaacatcag
tatatggaaggagatgaggatgatgaagttattgttttcaggcctatggtgtctgagatg
cgagctgatgtggctggctcatcatggacaccccatgaggggatggagcctgttctaaaa
gcttcaggaggagatttaaaatttcatgttaactctacttctaatccactcaacaatcta
catcatcaaacaatgccgatttctgttagtggtatgattcctcaacacctgcaatcagtt
cagccgcatacatcaaggtggctggatgaggaaatttctctcgctaacaatttaaaaggt
cttgggttatttgagaatgggcatgtgatgaaacctagcttacaagaggctataggcatc
tcaaatcatgtcggacttcctattcctatccaacaatctattggtgtggatactaatgtg
tttcatggtctctccaaagcttcagaatctgtggtaccatccaaaattgacgctattgca
tcttcaggagtagtttctgatgcttttgcagtgaagacatcagccatgcaacctggtatg
agaaaagcccctgccccagtcagtcgacctgctaggcaccttggacctcctcctggtttc
aatcatgttccttctaaacaaagtattgaattcactacttcagattcaatgagtgggaat
ccaattctcgatgactacagttggttggatgggtatcaattgcagtcatcaaccaaaggc
ttaagctcgaatggttctcttgcttattctcagtcaaattcttaccaactcagtaacaat
ggcttgaacgggaatatcagctttccatttcctggaaaacaagttccatctgtacctctt
caggtggagcaacagaatgtttggcaagattatcaaccttatgagcttttaaattcacac
catgatcaacagcttcagccacaacagctcacaactggaactcaacagttttctcctctg
cctgagcaatttcaaggacagtcaatctggacaggtcgttacttcgtgtga
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integrated database retrieval system