Fructilactobacillus lindneri: AYR59_05335
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Entry
AYR59_05335 CDS
T04666
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lle
Fructilactobacillus lindneri
Pathway
lle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR59_05335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lle03019
]
AYR59_05335
03400 DNA repair and recombination proteins [BR:
lle03400
]
AYR59_05335
Enzymes [BR:
lle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYR59_05335
Messenger RNA biogenesis [BR:
lle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR59_05335
DNA repair and recombination proteins [BR:
lle03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYR59_05335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANZ59474
LinkDB
All DBs
Position
1067959..1069398
Genome browser
AA seq
479 aa
AA seq
DB search
MQTVKLKLTKIKGLLKEKFGFSKLRSGQIDTINELLTGNNVLAVLPTGSGKTLIYQLFGY
LVNKPIVIVSPLLSLMSDQVNRMNFLGEKKVVALNSNQDWEQKQFALKHLNQYRYIFISP
EMITNQQVLQKMKQLSLGLFVVDEAHCISKWGVDFRPDYLELGHVLATLNNPQVLMLTAT
ASQKVQNDIIKKLQLKNFQKIIKSVDRPNIYLGVHKSLNELEKQSYLLDILKKLKGNGII
YFSSKKMANVMADMIQQKTGLTTAAYHSDLSSADRFKIQHQFMDNDLQIICATNAFGMGI
DKSDVRFVIHYHMPQDLESYVQEIGRAGRDGKQSLAILLYAEGDEQIAANLIEHSLPTKM
EIDFYLQKEYSRIEESKKNLLDFYFKHDFSVEQIQKVFQDEFSQKEKELFKMLDYIQCSG
CRRKVLLANFDEEFDSHDEICCDFGIENNIDFSLFEQKLNIKVSTNDKSNWQQIINDLL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacggtgaaattgaaattgacgaaaattaaaggattattaaaagaaaaatttggc
ttttctaaattaagatcaggacaaatcgatacgattaatgaactattaactggcaataat
gttttagctgttttaccaacaggatctgggaaaactttaatttatcagctatttggctat
ttagttaataagcctattgtgattgtttctccattactttcattaatgagtgatcaagtt
aatcgaatgaattttttaggtgaaaaaaaagttgttgcattgaattctaatcaggattgg
gaacaaaaacaatttgctttaaaacacttaaatcaatatcgatatatttttatttcccca
gaaatgattaccaatcaacaagtgttacaaaaaatgaaacaattatcccttgggttattt
gtcgttgatgaagctcattgtatttcaaaatggggagttgattttcgtcccgattattta
gaattagggcacgttttagcaacgcttaataaccctcaagttttaatgttgacagcaact
gcgtcacaaaaagtgcaaaatgatataattaaaaaactacaattaaaaaattttcaaaaa
atcataaaaagcgttgatcggcctaatatctatttaggtgtccacaaatctctaaatgaa
ttagaaaagcaaagctatcttttggatattttgaaaaagcttaagggtaatggaatcatc
tatttttctagtaaaaaaatggctaatgtaatggctgacatgattcagcaaaaaactgga
ttaacaacagccgcttatcattcagacttaagcagcgcagatcgttttaaaattcaacat
caatttatggataatgatttacaaattatttgtgctactaatgcatttggaatgggaatt
gataaatcagatgttagatttgtaattcattatcatatgccacaggatttagaaagttat
gtccaagaaataggtcgtgctggtcgtgatggaaaacagagtttagcaattttattatat
gcagaaggtgatgaacagattgctgcaaatttaattgaacattcacttccaactaaaatg
gaaattgatttttatttacaaaaagaatattcaagaatcgaggagtccaaaaaaaattta
ttggatttttattttaaacatgattttagtgttgaacaaattcaaaaagtctttcaagat
gaattttctcaaaaagaaaaggaattatttaaaatgctagattacattcaatgtagtgga
tgtagaagaaaagtattattagctaattttgatgaagagtttgattctcatgatgaaatt
tgttgtgattttggaatagaaaataatattgatttttcattatttgagcagaaacttaat
attaaagtttcaactaatgataaaagtaattggcagcagattattaatgatttgctatag
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