Labilithrix luteola: AKJ09_09606
Help
Entry
AKJ09_09606 CDS
T04033
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
llu
Labilithrix luteola
Pathway
llu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
llu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AKJ09_09606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llu03400
]
AKJ09_09606
Enzymes [BR:
llu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AKJ09_09606
DNA repair and recombination proteins [BR:
llu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AKJ09_09606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
CT_584-like
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKV02943
UniProt:
A0A0K1QB33
LinkDB
All DBs
Position
10130248..10132815
Genome browser
AA seq
855 aa
AA seq
DB search
MARGDGDGTSRRRRRAPAPKRGSALRTYQELRDFESTSEPTAQIRPSATGRSFVVQQHAA
TAMHYDFRLELDGVLKSWAIPKGPSLSPTDKRLAVQTEDHPVDYRDFEGSIPEDQYGGGP
VIVWDRGEWQPKGNPDEGLQKGRLEFSLRGEKLHGAFVLVRMPDRQASPSRKKKDTWLLI
KRRDSFARDDGASSVVTRLPRSVLTDRTIEDIEAGAPALPKRTTSKEASTRARTAKMPRF
GAIEPQLATLVGAVPVAGPTTVGDWIYEIKYDGYRAITTLDHGEVQIASRNGKDWTSKFP
EIAEAVSRIRAKQAVFDGEIAYVLPDGRTDFQHLQNALGAAAKERAQIVYFVFDLLYFDG
VDLRDEPLITRKDTLRTILAYEKPPLRLADHVDERGETFFTHACKAGLEGIIAKRADRPH
VSGRGRDWVKVKCQKRQEFAIVGFTPPKGSRSGIGALLLAVHRGGRYQYAGKVGTGFTAR
TLQDLRKRLDKLTDGAKAPDGAPRMKDAVWVEPKLVGEVRFTEWTKDGVLRHPSFEGLRI
DKKPAEVVRETGDNRVLGITITHPERIVDRTLGLTKLDLARYHEAVAERLLAFAKKRPLM
LVRCTESWTADKLGPLQGTKAKRACFVQKHGGRGLTANIGHSDVEGEEVLYVQKPREVIE
LVQFNAIELHGWGSTLPRFDRPDWIVFDLDPDEALGFDKVVEAALALRASLGAIGLVSFV
KTTGGKGLHVVVPLNRRDGWEAVRTFAEDVARAFAEQASDKYVANMSKAKRRGKVFIDYL
RNAQGATAVLPYSPRARPGTPVAMPVAWNDLEHLDPRELDVFSVPKLLAKQKKDPWAGLL
QTSQSLGRAKRAKTK
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcggcgacggcgacgggacttcacgacgtcgccggcgcgcgcccgccccaaag
agaggttcggctctccgaacgtaccaagagctccgggacttcgagtccacgagcgagccc
accgcccaaattcgtccgtcggcgacgggtcgatcgttcgtcgtgcagcagcacgccgcg
acggccatgcattacgactttcggctggagctcgacggtgtgctgaagagctgggcgatc
cccaagggccccagcctctcgccgacggacaaaagactcgccgttcaaaccgaggatcac
ccggtcgactaccgagacttcgaaggctcgatccccgaagatcagtacggcggcgggccg
gtcatcgtctgggatcgcggcgaatggcagcccaagggcaacccggacgagggcctccaa
aaggggcgccttgagttttccctccgcggagagaagctccacggggccttcgtgctcgtg
cgcatgcccgaccgccaagcgagcccttcgcggaagaagaaagacacctggctgctcatc
aagcgccgcgattcgttcgctcgcgacgatggggcgagctcggtggtcacacgcttgccg
cgaagcgtcctcaccgatcgaaccatcgaagacatcgaagccggagcccccgccttgccc
aaacgaaccacgtcgaaggaagcatcgacgcgcgcccgtaccgccaagatgcctcgcttc
ggcgctatcgagccgcaactcgccacgctcgtgggcgcggtgcccgtcgctggaccgacc
acggtcggcgactggatctacgagatcaagtacgacggctatcgcgccatcacgacgctc
gatcacggcgaggtccagatcgcctcacgcaacggcaaggattggacctccaagttcccc
gagatcgccgaggccgtgtcgcgcatccgcgcgaagcaggccgtgttcgacggcgagatt
gcctacgtcttgccggacggacgcaccgacttccagcacctgcagaacgcgctcggtgca
gccgcgaaggagcgcgcgcagatcgtctacttcgtcttcgacctgctctacttcgacggt
gtcgatctccgcgacgaaccgctgatcacacgcaaggatacgctccgcaccatcctcgcg
tacgagaagccgccgctgcggctcgccgatcacgtggacgagcgcggcgaaacgttcttc
acccacgcctgcaaggccgggctcgagggcatcatcgccaagcgcgccgatcgcccgcac
gtgagcggacgcgggcgcgattgggtgaaggtgaagtgccagaagcgacaagagttcgcc
atcgtcggcttcacgcccccgaaggggtcacgcagcggcatcggcgcgctgcttctcgcc
gtgcaccgcggaggccggtaccagtacgccggcaaggtcggcacgggcttcaccgcccgg
acgctccaggatctgcgcaagcgcctcgacaagctcaccgacggcgccaaagcccccgat
ggggccccgcgcatgaaagacgcggtttgggtcgagccgaagctcgtcggcgaagtccgg
ttcaccgagtggaccaaggatggagtccttcgccatccctcgttcgaaggacttcgcatc
gacaagaaacctgccgaggtcgtgcgcgagacgggcgacaaccgcgtgctcggcatcacc
atcacgcatcccgaacgcatcgtcgaccgcacgctcggcctgacgaaactcgatctcgcg
cgctaccacgaggccgtggcggagcgcctgctcgccttcgccaagaagcggccgctcatg
ttggtgcgctgcacggaatcgtggaccgccgacaagctcggcccgctccagggtacgaaa
gccaagcgagcctgcttcgtccagaagcacggaggtcgagggctcaccgcgaacatcggc
cactccgacgtcgaaggcgaggaagtgctctacgtgcagaaacctcgcgaggtgatcgag
ctcgtccagttcaacgccatcgagctccacggatggggttccacgctcccgcgcttcgat
cgtcccgattggatcgtgttcgatctcgatccggacgaagccctcgggttcgacaaggtc
gtcgaagcggccctcgccctccgcgcttcgctcggcgcgatcgggctcgtgagcttcgtc
aagacgacgggcggcaaaggcctgcacgtcgtcgtgcctctgaatcgtcgcgatggttgg
gaagccgtgcgcacgttcgccgaagacgtcgcccgggcgttcgccgagcaagcgtcggac
aagtacgtcgccaacatgtccaaggcgaagcgtcgggggaaggtcttcatcgactacctg
cgaaacgcgcaaggcgcgaccgcggtgcttccctattcgcctcgcgcccgcccgggtacc
ccggtggcgatgccggtggcctggaacgatctcgagcacctcgatccacgcgagctcgac
gtgttctcggtgcccaagctcctcgccaagcagaagaaagatccgtgggccggccttctc
cagacctcccagtcgctcgggcgagccaagcgcgccaagacaaaatga
DBGET
integrated database retrieval system