Lysobacter maris: C9I47_0218
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Entry
C9I47_0218 CDS
T05495
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lmb
Lysobacter maris
Pathway
lmb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C9I47_0218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmb03400
]
C9I47_0218
Enzymes [BR:
lmb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C9I47_0218
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C9I47_0218
DNA repair and recombination proteins [BR:
lmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C9I47_0218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
AWV05944
UniProt:
A0A2U9T4M9
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All DBs
Position
291620..292447
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AA seq
275 aa
AA seq
DB search
MPELPEVETTRAGLAPHLEGRRVTAAVLRRPDLRWPIPEAIEQVLPGQRIETVRRRAKYL
LLDTAVGSALLHLGMSGSLRVLPADTPVRAHDHVDLALETGHGGVAQVLRFNDPRRFGCL
LWQPSGETHTLLRGLGPEPLSEAFDGDHLFDLSRGRKAPVKTFLMDQAVVVGVGNIYAAE
ALFAARISPLRAAGKVSRERYAALADAVKAILGQAIVRGGTTLRDFISPDGAPGYFEQEL
SAYGRGGAPCPRCGRALKQASIGQRATVWCGHCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagtcgaaaccacccgcgccggtctcgcaccgcacctggaaggg
cggcgcgtgaccgccgcggtgctgcgccgccccgacctgcgctggccgatccccgaagcg
atcgaacaggtgctgccggggcaacggatcgaaacagtccgacgccgcgccaagtacctg
ttgctggacaccgctgtcggcagcgcgctgctgcatctgggcatgtccggcagcctgcgg
gtgctgccggcggatacgccggtgcgcgcccacgatcacgtcgacctggcgctggagacc
ggccacggcggtgtcgcccaggtgctgcgcttcaacgacccgcgccggttcggctgcctg
ctgtggcagccgtcgggcgagacccacacgctgctgcgcggactggggccggaaccgttg
tcggaggcgttcgacggcgaccatctgttcgatctgagtcgtggccgcaaggcgccggtc
aagacattcctgatggaccaggcggtggtggtcggggtcggcaacatctacgccgccgag
gcgctgttcgcggcccggatatcgccgttgcgggcggccggcaaggtttcgcgcgagcgt
tacgcggcgctggcggacgcggtcaaggcgatcctcggccaggcgatcgtgcgcggcggc
accaccctgcgcgacttcatcagtcccgacggcgcccccggctatttcgaacaggagctg
tcggcctacggacgcggcggcgcgccctgtccgcgctgcggccgcgccttgaagcaggcc
agcatcggccagcgtgcgaccgtctggtgcggccactgccagcgctag
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