KEGG   Leishmania mexicana: LMXM_29_3440
Entry
LMXM_29_3440      CDS       T02288                                 
Name
(RefSeq) putative DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lmi  Leishmania mexicana
Pathway
lmi03030  DNA replication
lmi03410  Base excision repair
lmi03420  Nucleotide excision repair
lmi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lmi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LMXM_29_3440
   03410 Base excision repair
    LMXM_29_3440
   03420 Nucleotide excision repair
    LMXM_29_3440
   03430 Mismatch repair
    LMXM_29_3440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lmi03032]
    LMXM_29_3440
   03400 DNA repair and recombination proteins [BR:lmi03400]
    LMXM_29_3440
Enzymes [BR:lmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LMXM_29_3440
    6.5.1.6  DNA ligase (ATP or NAD+)
     LMXM_29_3440
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LMXM_29_3440
DNA replication proteins [BR:lmi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    LMXM_29_3440
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     LMXM_29_3440
DNA repair and recombination proteins [BR:lmi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LMXM_29_3440
   NER (nucleotide excision repair)
    Other NER factors
     LMXM_29_3440
   MMR (mismatch excision repair)
    Other MMR factors
     LMXM_29_3440
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 13451712
NCBI-ProteinID: XP_003877490
UniProt: E9B1B9
LinkDB
Position
29:1239262..1241565
AA seq 767 aa
MHQTTFERFVGRKAPAGGPSGPDAPREESKRAATEANREDRRRPREEEKVAGPYVSSTPA
SSSDSRLRTSWNEPTNAYYAQHVAEYKALVTDVPPPTATSMAKLLQESSFDPVTTFEAVW
LPPRVPATAPTAGASEPVPFAAVVDVLADISATGSRLECLKQLTFLLLAVIERCPEDLVP
VMYLVINKHAPQHEGVELGIGDAVLVKAVAECCGMTEARAKEEYRQSGDLAEIAQMHKQK
QSTLMKPKPLSAQSVFKTYKEIAMMSGRDVMRRRSDLIKGLLRDAQGPEVNLIVRGLQQK
MRIGLAEPSALAAVGYAFALHFLGDAQMHQMDVVQLQTLLNTGADSVTRIFYEVPSLDVV
LSAVLANGFMTLVPGSSIAKRYAKDLSIRPGLPVKPQLAYPTSSITVILDRLQGKKFTSE
YKYDGERAQIHYDKEKGFYIFSRNSETHTGKYPDVISMLPKVFDPAEVDSFILDSEVVAV
HPETGVLQAFQVLQHRGRKNIAEEDVIIPVCVFVFDILYFNGEPQLNKTLQQRRELLWRC
IHPLPAKLSFATYLDSDKVEDVQTFLERSIADGCEGLMVKTLEEEANYTPAKRSHYWLKL
KKDYMDGVTDTLDLVPIAAFYGKGKRTGVFGGFLLACYDPKADEYQSICKIGTGFQDEEL
EKLTQSLKSFVVDDKPRYYRAGGEEPDVWLTEAQVWEVKAADLSVSPVHQAAVGLVDPNK
GIALRFPRYLRQREDKKPADATSAQQVADMYKAQSSAAQPDANGDAE
NT seq 2304 nt   +upstreamnt  +downstreamnt
atgcatcagaccactttcgagcgcttcgttggacgcaaggccccggcaggcgggccgagc
gggcccgacgccccgcgtgaggagtcgaagagggcagctaccgaggcaaatcgcgaggat
cgaaggcgaccccgggaggaggaaaaggtagcgggcccttacgtatcgagcactccggcc
tcgagctcggactctcgtctgcggacaagttggaatgagccaacgaatgcctactacgca
caacacgttgcagaatacaaggcgctggtcaccgatgtgccgccgcccactgcgacgtcc
atggcgaagctgctccaggagtcctccttcgatcctgtgacgacgttcgaggcagtatgg
ctgcctccccgggtccctgccacggcgcctactgctggtgcatcggagccagtaccgttt
gcggcagtagtggacgtgctggcagacatcagcgccaccggctcgcggcttgagtgctta
aagcagctcacctttctgctgctcgctgttatcgagcggtgcccagaggacttggtgccg
gtgatgtacctggtgatcaacaagcatgcgccgcagcacgagggggtggagctcggcatc
ggcgatgcggtgctggtgaaggcggtggccgagtgctgcggcatgacggaggcccgagct
aaagaggagtaccggcagagcggagacttggcggaaatcgcgcagatgcataagcagaag
caaagcacgctcatgaagccgaagccgctctccgctcagagcgtgttcaagacatacaag
gagatcgccatgatgagcggcagggatgtgatgcggcggcggtcggacttgatcaaggga
cttttgcgcgacgcacagggcccggaggtgaacttgattgtgcgtgggcttcagcagaag
atgcgcatcggccttgccgagccatctgccttggcagctgtggggtacgccttcgctctt
cacttcctcggtgacgcgcaaatgcaccagatggacgtggtgcagctgcagacgttgctg
aatacaggagccgacagtgtcacacgtatcttctacgaagtgccgagtctcgacgtggtc
ctgagcgcggttcttgcgaacggtttcatgaccttggtcccgggtagctccatcgcgaaa
cggtatgcaaaggacttgtccattcggcctgggctgccggtgaagcctcagctagcgtac
ccgacgagcagtatcaccgtcatcctggaccgtctgcagggcaagaagttcacgtcggag
tacaagtacgacggtgagcgcgcgcagatccactatgacaaagagaaaggcttctatatc
ttttcccgcaactccgagacccacaccggcaaataccccgacgtcatttcgatgctgcca
aaggtctttgacccagccgaagtagactctttcatcctcgactcggaggtcgtggctgtg
catccggagaccggggtgcttcaggccttccaagtgctgcagcatcgcggccgaaagaac
attgcggaggaggatgtcatcattcccgtctgcgtgtttgtctttgacatcttgtacttc
aacggagagccacaactgaataagacactgcagcagcgtcgcgagctgctgtggcggtgc
atccatcccctcccggcaaagctgtccttcgccacgtacttggattcggacaaggtcgag
gacgtgcaaacgtttttggagcggtccatcgcggacggctgcgaaggattaatggtgaag
acgctcgaggaggaggccaactacacccccgccaagcgctcgcactactggctgaagctg
aagaaggactacatggacggcgtcaccgatacgctggatcttgttcccatcgccgctttc
tacggcaaggggaagcgaactggcgtgtttggcggcttcctgctggcgtgctacgacccg
aaggcggacgagtaccagagcatctgcaaaatcggcaccggcttccaggacgaagagctg
gagaagctcacgcagtccctgaagtcgttcgtggtggacgacaagccgcgctactaccgt
gccggtggagaggagccggatgtttggctcaccgaggcgcaggtgtgggaggtgaaggcg
gcggacttgtcagtgtcgccagttcatcaggcagccgtggggctcgtggaccccaacaaa
ggtatcgcactgcgctttcctcgctacctgcgccagcgcgaggacaagaaacccgcagac
gccacaagtgcacagcaggtggcggacatgtacaaggcgcagtcctcggctgcgcagccc
gacgcgaacggggacgccgagtga

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