Listeria monocytogenes SLCC2372 (serotype 1/2c): LMOSLCC2372_0878
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Entry
LMOSLCC2372_0878 CDS
T02220
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmx
Listeria monocytogenes SLCC2372 (serotype 1/2c)
Pathway
lmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMOSLCC2372_0878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmx03019
]
LMOSLCC2372_0878
03009 Ribosome biogenesis [BR:
lmx03009
]
LMOSLCC2372_0878
Enzymes [BR:
lmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMOSLCC2372_0878
Messenger RNA biogenesis [BR:
lmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMOSLCC2372_0878
Ribosome biogenesis [BR:
lmx03009
]
Prokaryotic type
rRNA helicases
LMOSLCC2372_0878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_19
NABP
Motif
Other DBs
NCBI-ProteinID:
CBY54213
LinkDB
All DBs
Position
904696..906264
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AA seq
522 aa
AA seq
DB search
MTLTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGL
PMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLK
KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQT
LLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQ
APELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATD
VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEET
TKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAM
LKMLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGK
GRRSGGGSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacattgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaat
cggatggggtttgaagaagcaacaccaatccaagaaaagacaattccactaggattagaa
ggtaaagacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtctt
ccaatgattcacaaaattgaccaaaagagtaacaacgtacaagctttaattattgctcca
acacgtgaacttgcaatccaagtttcagaagagctttataaacttagctatgataaacat
gtacgtgtgctagcggtttacggtggtagtgatatcagccgtcaaatccgttcacttaag
aaaaacccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgc
acactgaaactagatcacgtggaaacacttgtactagatgaagcagacgaaatgctaaac
atgggcttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaact
ttactattttctgcaacaatgcctgatccaattcgccgtatcggtgaacgtttcatgcat
agcccagaacttattcgtattaaagcaaaagaaatgactgcactattaatcgaacaattc
ttcgtaaaagtgcatgaaaaagaaaaatttgacgtattatctcgtttattagatgttcaa
gcaccagaattagcaattgtttttggtcgtacaaaacgtcgtgtagacgaactatctcgc
gcgcttgatatgcgtggttacgtggctgaaggtatccacggtgacttaacgcaagcaaaa
cgtatgagcgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagac
gtagcagcacgtggacttgatatttccggtgtaacacatgtatataactatgatattcca
caagatccagaaagctatgttcaccgtattggtcgtactggtcgtgctggtaaagaaggt
atggcgattacattcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaact
acgaaaaaacgtatgcaaccacttcaagctcctacatgggacgaagcatttgcaggccaa
ttacgcgtagcaactgaaaaaattcaagaagcaattacagaagaaaacttagctgactac
aaaacgtttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatg
cttaaaatgttagcgaaagaaccagataaaactcctgtccatattactgaagagcgtcca
ttaccatcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggcaaaggtggc
ggctatcgcggcggaagcggcaaaggcggaagctaccgtgatcgtaacaacagcggtaaa
ggtcgtcgtagcggcggcggttccggtggtggaagcggctctggcggtggcggcaatcgt
gatcgtcgtggcggcggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaa
tctaaataa
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