Lepisosteus oculatus (spotted gar): 102683245
Help
Entry
102683245 CDS
T07349
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102683245
NCBI-ProteinID:
XP_015203952
Ensembl:
ENSLOCG00000001473
LinkDB
All DBs
Position
LG6:complement(685295..742899)
Genome browser
AA seq
1659 aa
AA seq
DB search
MWVTWPAVVSGVLCLLSTMLSCEGSQLSSATGARCPVLQVEDWRFQPAELQSNITGFNLV
RKFGLLKAPEVKKIRNPRGPIILRLGNLPLIRPTEQVFPRGLPEEFTLVITLLLKKKTAR
ENVYLFQISDPQGYPQLSLDLNGPDRTLSLRAQAREHQGDGFVGCTFSGEGVASLFNFRW
HKVALSVRAGAAALYVDCSSIETKPLDDRRVVEPHGHTLLGIRASDGAAAEFDIQQMTVY
CHPGLAIQESCCEIPGARCPPDTPKSRRAAESSPRSNLVEVVPQPEGKVYTRCFCLEEGP
GDTQVQSGTQDAGDKCAPCVQVNQEQRDESAPYRIQAEKGDRGAPGFHGSKGEKGERGAD
CVGTEAGFSGSCSEGPKGEKGAKGEVGPAGIGAPGFKGSKGEKGNKGDGGQQGVAGTPGK
DGRPGEVCVVGPKGQKGQPGPVGPEGLVGEPGPPGVPGLAGIGVPGPPGIPGGPPGGKGD
KGDSGMPGQEGQPGDPGPRGPGGPKGEKGDPCEVCPVLPDGLENTVALQGKPGPKGEPGA
PGGGEPGLPGSPGLQGIKGDKGESGSSGLKGEKGESCELCPTLGQLPANLINAQEAKLNM
KGEPGEPGATGLSGQKGEKGHTGERGPEGRTGKTGQRGLGGRDGEKGDKGDSGVPGIKGE
SGFKGEKGDSCDLCPALPAEAGGPQPTIRLAGLPGERGEPGTPGIGKPGEPGRPGSPGLK
GEKGNQGLQGDPGTAGSAGVPGLSGEPGRSGLPGPKGEKGDACEMCPSLPEGLKDTVGIP
GHKGERGEPGLPGTGIPGRHGQPGLPGATGPPGPKGSQGDPGVAGQGLPGPQGEDGQRGP
PGKQGPAGKTGATGPRGVKGEKGSEGPEGPPGPLGPVGIGVMGPPGKDGIPGIPGGDGHP
GTSGPKGDKGEPGDCGCQPPTFTNSGRPGAPGTLVTGNFWQPGPQGPPGPPGPPGPPGPQ
GFIGIPGPQGIPGNDGLPGKPGLPGEVPPLALIGETKIEVLKQGLCRDCSQGLPGVPGVI
GMKGEKGEQGEQGQPGAGSSDGCEKCFERLQKEEARGDNGNGGPGCPGVPGTPGIPGQRG
EKGEQGEEGSHGSQGPRGFPGPPGPMGPPGFPGSPGPSGLPGQQGERGLPGPAGMKGEQG
PPGSPGYPGSMGPPGLHGLKGERGNPGTVGQKGESGPPGSPGYQGPAGSPGPKGDHGVSG
NPGLKGDQGFQGPPGFPGQPGPPGFPGKAGPAGPQGPPAEKGSEGPRGAQGPMGPPGSPG
TPGMQGPPGIEGMDGKDGKPGPRGEPGPVGPIGPRGLPGFKGKTGHTGFPGQKGDMGPQG
SPGAPGRPGMEGDPGTPGLQGPAGPPGHLGAAGPMGPPGPAGPPGLGVKGERGQAGERGL
PGMVGPPGPPGHPGQSGEPGSDGTPGKDGAPGQPGERGLAGQKGEAGSPGSQGPAGERGR
PGLPGGSAKSDSSGIGLMGPVGPRGERGSTGAPGPAGPPGMPGMPGTDGVVNYDEVKNFI
RQQVMKIFDERMAYYMSRVQLPVEMVSAPGRPGPPGKDGMPGRQGSPGMPGIPGQIGREG
RQGPQGPPGVPGNKGEKGDKGVGEMGDIGPPGAPGVQGPPGYGKMGPPGPVGQQGIPGVP
GSPGTPGSPGKQGRCNPSDCMGMMPVEQYQPKSMKGPFR
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtgacctggccggcggtcgtctcaggcgtgctctgcctgctgagcacgatgctg
tcatgtgaaggaagccagctgtcctctgctacaggtgcccgctgccccgtgctgcaggtg
gaggactggaggttccagcccgctgagctccagagcaacatcacaggtttcaatctggtg
aggaagtttgggctgctgaaggcccctgaggtgaagaagatccggaatcccagaggccca
atcatcctgaggctgggaaacctgcctctgatccggcccactgaacaggtgttcccccgt
ggactgccggaggagttcacactggtcatcactctgctgctgaagaagaagacagcaaga
gaaaacgtctacctcttccagatctccgacccccaggggtacccgcagctctctctggac
ctgaacgggccggaccggaccctgtccctgcgggcacaggcgcgggagcaccagggggac
gggttcgtgggctgcacgttcagcggcgagggtgtggcttcgctcttcaacttccgctgg
cacaaggtggccctgagcgtccgggccggcgccgccgccctctatgtggactgcagctcc
atcgagaccaagcccctggacgacaggcgggtggtggagcctcacggacacaccctcctg
gggatccgcgcctctgacggggcagcggcagagtttgatatccagcagatgacggtgtac
tgtcaccctggcctggccatccaggagtcgtgctgtgagattcctggcgctcggtgcccc
cctgacaccccaaaaagccggcgtgccgcagagagcagcccgcggtccaacctggtggag
gtggtgccacagccggagggcaaggtgtacacacgctgcttctgtctagaggaggggccc
ggggacacacaggttcaatcagggacgcaggatgcgggagacaaatgtgccccttgtgtc
caggtgaaccaggagcagagagacgagagcgctccctacaggatccaggctgagaaagga
gaccggggagctccagggtttcacggctcaaaaggagagaaaggagaacggggtgcagac
tgtgtgggaactgaggctggtttctcaggctcttgttcggagggacccaagggagagaag
ggagcgaagggcgaagtgggtcctgctgggattggggcaccaggattcaagggctctaag
ggggagaaaggcaataaaggggatgggggccagcagggtgtggcggggaccccagggaag
gacggccggccgggggaggtctgcgtggttggtcccaaaggtcaaaaaggtcagccgggg
cctgtggggccagaggggctggtgggggagccggggccacctggtgtcccagggctggcc
ggaattggggtgcctggaccgccgggcatccctggagggcctcccggagggaaaggagac
aagggggattctgggatgcctggtcaagagggtcagcctggggatcctgggcccagggga
ccagggggtcctaagggagagaagggggacccctgtgaagtgtgccccgtcttgccggac
ggcctggagaacaccgtggccctgcaggggaagccaggccccaagggagagccaggggcc
ccgggcggaggagagccagggctgccgggatctcctggcctccagggaatcaaaggcgat
aagggggagtcaggatccagtgggctgaagggagagaagggtgaatcatgtgagctctgc
ccaacgctcggccagctgcctgccaacctgatcaacgcgcaggaggccaaactgaatatg
aaaggcgagccgggtgagccaggagccacaggtctgtcaggacagaaaggagaaaagggc
cacaccggcgagcgaggaccagagggcagaacgggcaagacaggacagcgtggcctgggt
ggccgtgatggagagaagggggacaagggtgattctggagtcccaggaatcaagggggag
tcaggcttcaagggagagaagggggactcctgtgacctgtgcccagcgctgcccgcagag
gctggtggcccccagcccaccatcagactggcaggcctgcctggggagaggggtgagccc
gggacgccagggatcggaaagccaggggagccgggtcggcctggcagtcctggactgaaa
ggagagaagggaaaccaggggctccagggtgatccggggacggcggggtctgcgggggtc
ccaggactttcaggggaacccgggaggagtggcctgccagggcccaagggggagaagggg
gatgcctgtgagatgtgtccatcactgccagagggcctgaaggatacagtggggatcccg
ggacacaagggcgagaggggggagcctggactcccggggacaggaatccctggaagacac
ggtcagcctggcctccccggagccacagggcctcctggtcccaagggcagccagggagat
ccaggagtagcaggacaggggctcccaggaccccagggagaggacgggcagaggggtccc
cccgggaagcagggtccagcaggcaagaccggagccacgggaccacgaggggtcaaagga
gagaagggctctgaaggaccagaagggcctccagggcccctgggaccagtgggcatcgga
gtgatggggcccccggggaaggatggcattcctgggatacctggaggggatggacacccg
ggaacaagtgggcccaaaggagacaagggagagccgggggactgcggctgccagcccccc
acattcaccaactccggcagacctggtgctcctggcacactggtcactgggaatttttgg
cagcctggacctcaggggccccccggacctcctggcccccccggccccccaggtccccag
gggttcattgggatccccggccctcagggtatccctggaaacgatggcttaccggggaaa
ccggggcttcccggggaagtaccacccctggcgctgatcggagaaacgaaaatcgaggta
ctgaagcagggcctctgcagagactgctcccagggcctgcccggcgtgcctggcgtgatc
gggatgaagggagagaagggggagcagggggagcagggccagccgggagcgggatcgagc
gacggttgtgagaagtgctttgagaggctccagaaagaagaagcccggggtgacaacggc
aatgggggtccagggtgccccggggtgccaggtaccccagggatccccggacagcgaggg
gagaagggagagcagggtgaagaaggatcacatggttcacagggccccagggggttccca
ggtcctccaggacccatgggtcctccaggtttccctggttctccaggtccctccggatta
cctggccagcagggagagcgtggacttcctggccctgcaggaatgaagggagaacagggt
cccccagggtcacctggatacccaggatcaatgggacctcctggcttgcatggcctgaag
ggagagagggggaacccagggacagtgggacagaaaggggaatcgggccctccaggctct
ccgggctaccagggacctgccggatcgccgggcccgaagggtgaccatggcgtctctggg
aatccaggactcaaaggggatcagggtttccaggggccaccggggtttccaggacaaccg
ggcccccccggattccctggcaaggctggtcctgctggtcctcaggggcccccggcagag
aagggcagcgaggggccacggggggcccagggccccatggggccccctggctcacctggg
acacctggaatgcaggggcctccagggattgagggcatggatggaaaggatggcaaacca
gggcccaggggtgaacctggtccagtcggtcctattggtcccagaggtctcccaggattc
aaaggaaaaaccggacatactggctttccgggacagaaaggagacatgggaccccaaggt
tcacctggagcaccaggacggcctggcatggagggtgatccagggaccccgggactacag
gggccagcaggacccccagggcatttaggggcagcagggcctatgggacccccaggacca
gcagggccgcctggactgggtgtgaagggggagagaggtcaggctggagaaagaggtctt
ccagggatggttggtcctcctgggcctcctggtcacccaggccagtctggagagccgggc
agtgatggcactccggggaaggatggcgctccaggacagccaggggagagggggctggcc
gggcagaagggagaggctggctctccgggttcgcagggccccgctggagagcgcggacgg
ccggggctgcccgggggatcggcgaagagcgactccagcggaatcgggctgatggggccg
gtggggccccggggagagagaggcagcacaggagcccccggtcctgccgggccaccggga
atgccgggaatgccaggaactgacggagttgtaaactacgacgaagtcaagaactttatt
cggcagcaagtcatgaagatcttcgatgagcgcatggcctactacatgtcccgagtgcag
ctccccgtggagatggtgtccgcccccggccggccaggtcctcccggaaaggacgggatg
cccggaagacaggggtcacccggaatgccaggtattcccggacagatcggccgagaggga
cgacaaggcccccaaggaccaccaggtgttccagggaataagggtgagaaaggagataaa
ggagttggggagatgggagacattggacctcctggggctccaggtgtccaaggtcctcca
ggttatgggaagatgggtcccccaggtcctgtgggtcagcaagggatccccggggtgcca
ggttccccaggaacgcccggctctcccgggaaacagggacgctgcaatccgtccgactgc
atgggcatgatgcccgtggagcagtaccagcccaagagcatgaagggacctttccgctaa
DBGET
integrated database retrieval system
