Lepisosteus oculatus (spotted gar): 102684760
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Entry
102684760 CDS
T07349
Symbol
notch1
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
102684760 (notch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
EGF_2
Ank_2
Ank
Notch
NOD
NODP
Ank_3
Ank_5
Ank_4
EGF_3
DL-JAG_EGF-like
cEGF
Gram_pos_anchor
Motif
Other DBs
NCBI-GeneID:
102684760
NCBI-ProteinID:
XP_015222264
Ensembl:
ENSLOCG00000003419
UniProt:
W5M6R2
LinkDB
All DBs
Position
LG21:complement(4954222..5001214)
Genome browser
AA seq
2542 aa
AA seq
DB search
MHHFFVKLIFLISLTGLTRGLRCTLPAETCLNGGRCETASDGSGECRCTDRYAGSRCQVT
NPCLSSPCKNAGTCRVVTHGNTVDYICQCRIGFTDRLCLTPTNNVCLSSPCKNGGTCDLL
SLTEYKCQCPPGWSGQMCQQADPCASNPCANGGLCTPFEAHYICKCPPTFHGQSCKQDVN
ECAQNPSPCRNGGQCVNQIGSYQCECLPEYTGKNCEVRYVPCNPSPCQNGGTCLQTGDTT
YECTCLPGFMGQNCEENIDDCPEHKCQNGGTCVDGVNTYNCQCRPEWTGQFCTEDVDECQ
LMPNACQNGGTCHNTHGGYNCVCVNGWTGDDCSENIDDCANAACYHGAICHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGMAICTCPPGYTGSACNNDVDECSLGA
NPCEHGGKCINTKGSFQCSCLQGYTGPRCELDVNECISSPCQNDATCLDRIGGFHCICMP
GYEGVFCEINTDECASMPCLNNGKCIDKINAFHCECPTGFAGNLCQVDIDECASTPCKNG
ARCVDGPNKYTCECAEGYTGPLCETDINECLSDPCHYGTCKDGIATFTCSCQPGFTGRLC
EININECQSQPCQNGGTCQDRQNNYICTCPKGTTGPNCEINLDDCKSKPCDYGKCIDKIN
GYECACEPGYTGAMCNVNVDECTSNPCHNGGTCKDGINGFTCICPEGYHDPTCRSEVNEC
NSNPCIHGSCQDDVNGYKCHCDSGWSGTNCDINNNECESNPCMNGGTCKDMTSGYVCTCR
AGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGENCEEILAPCGPKPCKN
RGVCRESEDYESFSCVCPEGWQGQTCEVDINECVKNPCLNSGSCQNTIGSYKCSCKPGYT
GRNCETDIDDCQPNPCSNGGSCTDRIDGFLCACLPGFRGSKCEEDINECDSNPCKNGANC
TDCVNGYTCTCPPGFSGIQCENNTPDCTESSCFNGGTCVDGINTFTCLCPPGFTGSYCQH
DINECDSKPCLNGGTCQDSYGTYKCTCPQGYTGLNCQNLVRWCDSSPCKNGGTCWQTGTS
YRCECQSGWTGLYCDVPSVSCEVAAKQQGVDVTQLCRNSGQCLDAGNTHYCRCQAGYTGS
YCEEQVDECTPNPCQNGATCTDYLGGYTCECVPGYHGVNCSEEINECLSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEINVDDCNPFVDPITQEPKCFNNGKCVDRVGGYHCICLAGFV
GERCEGDVNECLSNPCDPRGTQNCIQLVNSYRCECRTGYTGQRCDTVFDGCKGKPCRNGG
TCAVASNTPHGFICKCPPGFTGSTCEYDTHSCGTLRCRNGGTCILGHKSPKCLCTDAFTG
PECQYPANSPCNSNPCYNGGTCENSLEAPFYHCVCPTNFNGLLCHILDYNFQGGFGRDIT
PPPEVAVSCEIPECEKRRNDKICDRLCNNHACGWDGGDCSLNFDDPWKNCTMSLQCWRYF
NDGKCDEQCDNAGCLYDGFDCQNLEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CANNMPEKLADGRLVLVVHILPDQLKNNSFGFLRELSRVLHTNVVFRKDSKGEYMIFPYY
GNEQELRKHNIKRSADSWTEIPGNVFNKMKNSMYTVVNARKRRELDQMQIKGSVVYLEID
NRQCYQQSTECFQSATDVAAFLGALASSGNLNVPYIIEAVTSENTDYSSPPGLYSIYVVL
AALALLAFVGVGVVVSRKRRREHGQLWFPEGFKVNEPNKKKRREPVGEDSVGLKPLKNSS
DMSLMDDNQNEWGDEEPSDTKRFRFEEQAMLDLDDQTDHRQWTQQHLDAADLRIPSMAPT
PPQGEIDNDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDASANVISDFIYQGANL
HNQTDRTGETALHLAARYARSDAAKRLLEASADANIQDNMGRTPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVNN
VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANREITDHMDRLPRDI
AQERMHHDIVRLLDEYNLVRSPPMHNGPMSATLSPPLCSPNSYLGSMKPSAQGKKARKPS
AKGISCNGKDAKDIKARRKKSQDGKGSLLDSSAVLSPVDSLESPHGYMSDVASPPMMTSP
FQQSPSMPLNHLQGMSDTHIGVNHLGMAGKQDMTMGGSSRMQFDSVPPRLSHLPVSSPSS
SVLSNGNMTMAMGGGSGMNGQCDWLSRMHGNMGQNQFNPMRNTGQGGMHQATPSLQHGMM
TSLHNGLPTTTLSQMMSYQGMQNTRLTTQPHLMQAQQMQQMQHQQNLQQQLQQQQQQQQQ
QQSIQLQHQNSNTATSGHTISQNFISSDLSQSDLQQVSGNAIPIHTILPQETQILPTSLN
QTMPSTQFLTPPSQHSYSAPLDNTPNHQHQMSDHPFLTPSPGSPDQWSSSSPHSNMSDWS
EGISSPPTSMQSQIGHIPDQFK
NT seq
7629 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatttctttgtgaaactaatatttctgatttcattgactggtttaacacgaggt
ctgagatgcacgctacccgctgagacatgtttgaatggagggaggtgcgaaaccgcttct
gatggatcaggagaatgcaggtgtactgacagatatgcgggcagcagatgtcaggttacc
aacccctgcctcagctctccgtgcaagaatgctgggacatgccgggtagttacccacggt
aacactgtggattacatctgtcagtgccgcatcgggtttacggaccggctttgcctcaca
cctaccaacaatgtgtgcctgagctctccctgcaagaatggaggaacatgtgacctgctc
agtctcactgagtacaagtgccagtgccctccggggtggtcaggtcaaatgtgccaacag
gctgatccctgtgcctctaacccttgtgccaatggtgggctgtgcaccccctttgaagcc
cactacatttgcaagtgccccccgactttccacgggcagtcctgcaagcaggatgtcaac
gaatgcgcccagaacccatcgccatgccgcaacggaggccagtgcgtcaaccagatcggc
tcgtaccagtgcgagtgcctgccggagtacacgggcaagaactgcgaggtgcgctacgtg
ccttgcaacccctcgccctgccagaacgggggcacatgcctgcagacaggagataccacc
tacgagtgcacctgcctgccaggcttcatgggccagaactgcgaggaaaacatcgacgac
tgtcccgagcacaaatgccaaaatgggggcacgtgtgtggatggggtgaacacctacaac
tgccagtgccgtcctgaatggacaggccagttctgcacggaggacgtcgatgagtgccag
ctgatgcccaacgcgtgtcagaacggcggcacgtgccacaacacccacggcggctacaac
tgcgtgtgcgtcaacggctggacgggggacgactgcagcgagaacatcgacgactgcgcc
aacgcggcctgctaccacggcgccatctgccacgaccgcgtggcctccttcttctgcgag
tgtcctcacggaaggacaggtttgctgtgccacctggacgatgcctgtatcagtaacccc
tgtcagaaggggtccaactgtgacaccaaccccgtcaatggcatggctatctgcacctgc
ccccctggctacacgggctctgcctgcaacaacgacgtggatgagtgctctctaggtgcc
aacccatgtgaacacggaggcaagtgcatcaacaccaagggctccttccagtgcagctgc
ctgcagggctacacgggcccccgttgtgaactggacgtgaacgagtgtatctccagcccc
tgccagaatgatgccacctgcctggaccggataggtggcttccactgcatctgcatgccg
ggttatgagggagttttctgtgaaatcaataccgacgagtgcgccagtatgccctgtttg
aacaatgggaaatgtatcgacaagatcaacgcgtttcactgcgaatgccccacaggtttc
gctggtaacctgtgccaggtggacattgatgaatgtgccagcacgccctgcaaaaatggg
gcaagatgcgtggatggacccaacaagtacacctgcgagtgcgctgaaggttacactggc
ccgctctgcgagacggatatcaacgaatgcctctcggacccgtgccactatggcacctgc
aaagacggcattgccaccttcacctgctcctgccagcccggcttcacgggccgactctgc
gaaattaacatcaacgagtgtcagagccagccctgccagaacggaggcacttgtcaagac
cgacagaacaactacatttgcacctgccccaagggcacaacaggcccaaactgtgaaatc
aacctggatgactgcaagagcaaaccctgcgattatggcaagtgcatcgacaagatcaat
ggttacgagtgtgcctgtgagccgggatacacaggagccatgtgcaatgtcaacgtcgac
gaatgcacgtccaacccctgccacaatggtggaacttgcaaagatggcataaacggtttc
acttgtatctgccctgagggctaccatgaccccacctgtcgctcggaggtgaatgagtgt
aacagcaacccatgcattcacggcagctgtcaggacgatgtcaatggctacaagtgtcac
tgtgactctggctggagtgggacaaactgtgacatcaacaacaatgagtgtgaatccaac
ccctgcatgaatggaggcacttgcaaagacatgaccagtggatacgtctgtacctgcaga
gcgggatttagtggtccaaactgccaaactaacatcaatgagtgtgcttctaatccctgc
ttgaatcaaggaacctgcattgatgatgtggctggctacaagtgcaactgcttactgcct
tacactggggaaaactgtgaggaaatccttgctccttgtggccccaaaccctgtaagaac
agaggtgtgtgcagggagtcggaggactacgagagcttctcctgtgtgtgtcctgagggc
tggcaagggcagacctgtgaagttgacatcaacgagtgtgttaagaacccctgcctcaac
tccgggtcctgccagaacaccatcggtagttacaaatgcagctgtaagccaggctatacc
ggccgcaactgtgagaccgacattgacgactgccagcccaatccatgcagtaacggaggc
tcctgtacagatcgcatagacggcttcctgtgcgcctgcttgccgggattccggggaagc
aagtgcgaggaggacatcaacgagtgtgacagcaacccctgcaaaaacggtgccaactgc
acagactgcgtcaatggctacacctgcacctgtccgccgggctttagtggcatccagtgt
gaaaacaacactcccgactgcacggagagctcttgcttcaacgggggtacctgtgtggac
ggcatcaacactttcacctgcttgtgtcctcctggcttcacgggcagctactgccagcac
gacatcaacgagtgcgactccaagccctgcctgaacgggggcacctgccaggacagctat
ggcacttacaagtgtacctgtcctcagggctacaccggcctgaactgccagaacctggtg
cgctggtgtgactcttcgccctgtaagaacggtggcacgtgttggcagactggcacttcg
taccgctgtgagtgccagagtggctggactggtctttactgtgacgtccccagcgtttcc
tgtgaggttgcagctaaacagcaaggtgttgatgtgacgcagctgtgcaggaattctggc
cagtgtctggatgctggcaatacccactactgtcgatgccaggcaggctacactggcagc
tactgcgaagaacaagtggatgaatgtacacctaatccctgccagaatggagccacctgc
acggactacctgggtggatacacttgcgagtgtgtgccaggataccatggagtcaactgc
tcagaagagatcaatgagtgcctttcccagccctgtcagaatggagggacctgcattgac
ctcatcaatacatacaagtgctcctgtccgcggggaactcaaggtgtgcactgcgagatc
aacgtggacgattgcaacccttttgtagatcccatcacgcaggagcccaagtgcttcaac
aatggcaagtgtgtggacagagtgggcggctaccactgcatctgcctggcaggctttgtg
ggggagcgctgcgaaggggacgtcaacgagtgcctgtccaacccctgcgacccgcgaggc
actcagaactgcatacagcttgtcaacagctaccgctgtgaatgccgcacaggctacaca
gggcagcgctgcgatacagtatttgatggctgcaaaggaaagccatgtcggaatggagga
acatgcgccgtggccagtaacactccgcatggcttcatctgcaaatgtcctcctggcttc
accggatccacctgcgaatacgacactcactcgtgtggtacgttgcggtgtcgaaacggg
ggcacgtgcatcctgggtcacaagagtcctaaatgcctgtgcaccgacgccttcactggg
cctgaatgccagtacccggccaatagcccctgcaactccaacccctgctataacgggggc
acctgtgagaactccctggaggctcccttttaccactgcgtctgccccaccaatttcaac
gggctcctgtgccacatcctggactacaacttccagggcgggttcgggcgggacatcacg
cctcctcccgaggtcgcggtcagctgcgagatccccgagtgcgagaagcgcaggaacgac
aagatctgcgaccgcctgtgcaacaaccacgcctgcggctgggacggcggggactgctcc
ctcaacttcgacgacccctggaagaactgcaccatgtccctgcagtgctggcgctacttc
aacgacggcaagtgcgacgagcagtgcgacaacgctggctgcctctacgacggcttcgac
tgccagaatttggagggccagtgcaatccactctatgaccagtattgtaaggatcactac
gctgacgggcactgcgatcaaggctgcaacaacgcggagtgtgagtgggacggtctagac
tgcgccaacaacatgccggagaagctggcggacggcaggctggtgctggtggtccacatc
ctcccggatcagctgaagaacaactccttcggcttcctccgggagctcagcagggtgctg
cacaccaacgtggtcttccgcaaagacagcaagggcgagtacatgatcttcccctattac
ggcaacgagcaggagctcaggaagcacaacatcaagaggtcagcagatagctggacggag
atccctggaaatgttttcaacaagatgaagaactccatgtacacggtggtgaacgccagg
aagcgcagggagctggaccagatgcagatcaaggggtcagtggtgtatttggaaattgac
aacaggcagtgttaccagcagtctacagaatgtttccaaagtgcaacagatgtggctgcc
ttcttgggagctctggcctccagtggaaacctgaatgttccctacatcattgaggctgtt
acaagtgagaacacggactactcttcgcccccggggctctactccatctacgtggtgctg
gccgccctggctttgctggcgttcgttggcgtgggggtggtggtctccaggaagcggcgc
cgggagcacggccagctgtggttccccgagggcttcaaagtgaacgaacccaacaagaag
aaacgccgggagccggtgggggaggactctgtgggattgaagccactgaagaactcctcc
gacatgtccctcatggatgataatcagaacgagtggggggatgaggaaccttcagacacc
aagagattcaggtttgaagagcaggcgatgttggacctggatgaccagactgaccaccgg
cagtggacacagcagcacctagatgctgcagacctccgcatcccctccatggcccccacc
ccccctcagggcgagatcgacaacgattgcatggacgtcaatgtccgcggtccagatggc
ttcactcccctgatgatcgcctcctgcagcggaggaggcctggagaccgggaacagcgag
gaagaggaggatgcctcggccaacgtcatctccgattttatctaccagggtgccaacctg
cacaaccagacagaccgcacgggcgagacggccttgcacctggccgcccggtatgcccgc
tccgacgccgccaagcgcctcctggaggccagtgcagatgccaacatccaggacaacatg
ggcaggacgccccttcacgccgctgtggctgcagacgcccagggggttttccagatcctg
atccggaacagggccacagatctggatgcccgcatgcacgacggcaccacacctctcatc
ctggctgcacgcctggcagtggagggcatggtggaggaactcatcaactgccatgcggac
gtcaacgccatcgatgactttggcaaatcagctttgcactgggctgccgcagtgaacaat
gtggatgctgctgtggtgcttctcaagaatggcgccaacaaagacatgcaaaacaataag
gaggaaacgcctctgttccttgctgctcgagaaggaagctacgagactgccaaggttctg
ctggatcatttcgctaaccgcgagatcaccgatcacatggaccggctgccgcgtgacatc
gcccaggaacgcatgcatcacgacatcgtgcgcctgctggatgagtacaatctggtgagg
agccctcccatgcacaacggacccatgagcgccaccctctcccctcctctctgttcgcca
aacagctaccttggcagcatgaagccttcggcgcagggcaagaaagccaggaaaccgagt
gccaagggcatcagctgcaatggcaaagatgccaaagatatcaaagccaggaggaagaag
tcccaggatggcaaaggaagtctgctggacagctcggctgtcctctcccccgtggattcc
ctggagtctcctcatgggtacatgtcagatgtagcttctccacccatgatgacgtcaccc
ttccagcagtccccttccatgcccctcaaccatctgcagggcatgtctgacacccacatc
ggggtcaatcacctgggcatggcaggtaagcaggacatgaccatgggaggctccagcagg
atgcagtttgattcggtgccgccccgcctctcccatctgcctgtctccagccccagcagc
tctgtgctaagcaacggtaacatgaccatggcaatgggtgggggctccggcatgaatggc
cagtgcgactggctctcaaggatgcacggcaatatggggcagaaccagttcaaccccatg
aggaatacaggccaagggggcatgcaccaggccaccccatccctccagcatggcatgatg
acctctctacacaatgggctccccaccaccactctgtcacagatgatgagctaccagggg
atgcagaacaccaggctcaccacccagccgcatttaatgcaggcgcaacagatgcagcag
atgcagcaccagcagaaccttcagcagcagttacaacagcaacagcagcagcagcaacag
cagcagagcattcagctgcagcaccagaactctaatactgccaccagtggtcacaccatc
agccagaacttcataagcagtgacctgagccagtccgatctgcagcaggtgtctggaaac
gccataccgatccacaccatcctgccccaggagacacagatccttcccacctcactcaac
cagaccatgcccagcacccagttccttacccctccctcacaacatagttactctgccccc
ttggacaacacacccaaccaccagcaccagatgtctgatcacccctttctgaccccttcc
ccaggatcccctgatcaatggtctagctcttctccacattccaacatgtctgattggtca
gaaggcatctccagccctcctacaagcatgcagtcccaaattgggcacattccagatcaa
ttcaagtag
DBGET
integrated database retrieval system
