Lepisosteus oculatus (spotted gar): 102685256
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Entry
102685256 CDS
T07349
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102685256 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102685256 (prpf38b)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102685256 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
102685256 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
102685256
NCBI-ProteinID:
XP_006635023
Ensembl:
ENSLOCG00000007860
UniProt:
W5MMD1
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All DBs
Position
LG10:complement(13181390..13187379)
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AA seq
525 aa
AA seq
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MANNTALVAGNPQPQQQAVNKPAASGKQGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQ
LYELKTYHEVVDEIYFKVTHIEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKL
FTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPADLMDWFDSFLDDEEELDVKAGGG
CVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKLIDQQLKSRPRKVLKKDGKEEAEESDRH
ADRRRSRTPRRSPSPRRSPKRSRSRSHHRDGHGSTSFDWELERERERQRKEREVKDRDRG
ERDRRRSRSPDRAAERRRSRSKERRRSRSWSRDRKNDRKDKEKEREKENERSRKKDRDLE
KERERERERSRDAEKAKDKRSKGDIEEKKHKEERDEKKHRDDRKNKKHSRSKSRERKHRS
RSRSKNRGSRRSCSKSKERSSKHRTERLNKRSRSGSRGKTDSDEKSKKRDRSHSKERSHK
RSRSKERSHRKEHTDGKDHSSKHERRRSQSPERVEKLQGSRAESS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacacggcgttggtagccgggaatccgcagcctcagcagcaggccgtgaac
aaaccggctgcttcgggaaagcagggcaatgttttgcctctgtggggcaacgagaaaacg
atgaatttgaaccccatgatcctaacaaacgtgctttcgtctccgtatttcaaagtgcaa
ctgtacgagctaaagacctaccacgaggtcgtggacgagatctacttcaaggtgacacac
atagaaccgtgggagaaaggcagccggaagactgcaggccagactggcatgtgcggaggg
gttcgaggggttggaactggaggcatcgtttccacggctttttgtttgctgtataaactg
tttacacttaaattaacccgcaagcaagttatgggtctcatcacccacacggattctcca
tacatcagagcccttggctttatgtatataaggtacacacaacctccggcagaccttatg
gattggtttgattcattccttgatgatgaggaggagcttgacgtgaaagcaggtggagga
tgtgttatgacgattggggaaatgctgcgctctttcctaacaaagcttgaatggttttca
acattgtttccacgaattccagtcccagttcaaaagctgatagatcagcagcttaaaagc
agaccaaggaaagttctgaaaaaagatggaaaggaggaagctgaagaatctgaccgacac
gcagatcgcagacgctcaaggactccgaggagatctcccagccctcgcagatctcccaaa
aggtcgagaagtcgaagtcaccaccgtgatggacacggatcaaccagctttgactgggag
ctggagagggagcgggaacgtcagagaaaagagagagaggtcaaggaccgcgacagggga
gaaagggaccgcaggcgctcccgaagcccggatagagcagcagaacgcagacgaagcagg
agtaaggaaagacgacggagccgcagctggagtcgggaccgaaagaacgaccggaaagac
aaagaaaaggagagggaaaaagagaatgaacgaagcaggaagaaagaccgggatcttgag
aaggaacgcgaaagggagagggaaagatctagagatgcagaaaaggcgaaagacaagaga
agcaagggagacatcgaagaaaaaaaacataaggaagaaagagacgagaagaagcacagg
gatgaccggaaaaacaaaaagcacagcaggagcaaaagtagggagcgaaagcacagaagt
agaagccgcagtaagaaccgcggcagcaggcgcagctgcagtaaaagcaaggagaggtct
agcaaacacagaacggaaagattaaacaaacgtagcagaagtggtagcaggggaaagaca
gatagtgatgaaaagtcaaagaaaagagatcgaagccacagcaaagaaaggtcacacaag
cgtagcaggagcaaagagcgctctcaccggaaagagcacactgatgggaaggaccattct
agtaaacacgaacggaggagaagccaaagcccagagcgagtggagaagctacaggggagc
agagccgagtccagttaa
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