Lepisosteus oculatus (spotted gar): 102690841
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Entry
102690841 CDS
T07349
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102690841
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
loc00536
]
102690841
Glycosaminoglycan binding proteins [BR:
loc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102690841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102690841
NCBI-ProteinID:
XP_015222280
LinkDB
All DBs
Position
LG21:complement(1411757..1493759)
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AA seq
1841 aa
AA seq
DB search
MAGLARLLCALLALRCCRAGRRDSAELGSGAAPPEEVDLLEQISSQAVNNSDVSLAEDEQ
KCPVLHIGQYATLSLPTHHAFGPSFADEFSVLLELRSALREDTSVLTLLDHGGHILLQIR
LNPYTLTFVTTSRRDYEFPVGVLADGEWHRVALGVSARRLELFVDCALVEGVAWKNYFGM
GIATDGLLMVGGIVETFETPFEGSLRQMTFVMGDPDAAREHCALYLPICGGVSPKPPRSP
RIPNTRGLEDPVLSSNHLEDLLENSGSSTDIEGLFIDFAAQTPMPPRVAHPRGDGTSPSG
PGRPPSVIRGDVFLIEEGDPENGPLGESPRAGQPLGRTSDSAVDRPDPAPSSPPPPRRGP
PKGPRGGGASRAGKPDSASKTPEENVTTDKRKGHSGSGALGPFPGKPSDDIIDLDSSSSS
SVLLKKPSLRKPPPHGSQPPRPDSKVLMEEELLLPTRAPPRAGGGQGNSSGGGGSTLTGP
ATRKYKEGAVVQGSDGRPYRLKKGPPGPPGPPGKKGCSGRRGYPGFKGSKGSQGEMGRNG
LPGEPGLPGPAGLPTLYLWRNTEEEWATFRQTSFFQLLQAGWPKEQGPPGPPGEMGKPGL
PGIPGDPGPRGARGPRGYVGDPGPKGVSGRAGCRGSDGVHGIDGHAGPQGRPGPQGPQGY
KGENGPKGEKGDDGFVGQVGPAGDGGKEGEKGSKGEIGPPGPVGAPGQQGSRGSAGLQGP
RGPPGEIGPLGRAGPPGAAGDTGPTGAVGAQGINGSQGDSGPAGPPGPRGPQGPPGLQGV
RGSPGRRGQQGQPGKEGSPGPKGHMGTEGPMGARGEHGFEGPMGEIGSPGPKGMPGSRGS
RAPDGDKGDAGPTGERGPMGPPGVKGPLGVSGQSGFPGFPGPKGQLGTQGIQGEDGETGP
QGQAGSGGSKGNRGPDGPKGRPGPKGPRGRVGQRGLVGVSGMPGLRGQPGTEGPEGKPGT
QGAAGAPGSPGTEGDRGMGGLRGEPGQGGPPGSPGPPGRPGQDGSPGPLGERGFTGKPGV
EGPQGPVGMYGYPGPVGDRGRPGHMGERGEPGVRGPSGPPGKKGTPGSAGPPGERGPSGP
QGMRGEPGTKGIEGVPGLPGPPGPDGEMGKPGPPGDQGPQGPPGSEGPLGYPGKEGPRGP
EGAAGEKGDMGIMGLPGDPGTAGLDGEQGLPGHTGAEGPAGVKGEQGDAGPSGPAGPEGE
PGAPGPPGTKGLLGEPGPMGKEGDVGDPGDIGDPGPKGDKGAVGPLGPPGQAGPAGAVGQ
VGDRGQKGEKGHAGLLGQSGLMGVAGLSGFPGQAGEPGSPGPLGLDGSKGEKGEAGLRGV
AGHFGVAGPEGDPGEDGQKGDPGKPGPLGARGREGAHGVPGSKGVPGPVGPKGEPGEKGA
PGEQGPEGLPGIRGPPALPGLEGPPGEMGSQGPPGSAGPDGLTGHPGPEGSKGRKGEKGE
DGAEGDPGQPGPPGRTGKKGKAGLRGARGPKGEKGVTGEMGLEGPPGRQGPYGVPGLRGE
KGVRGEAGQKGEKGKMGPPGPYGDEGFKGRRGPPGEEGPQGMKGEQGDIGPAGPPGSPGL
PGLPGLFGEKGLKGFAGPPGLKGEKGLPGTPGLPGPPGASINITLEQLKALMHVSDQPNY
PLILALLDVLHQEVRLLVDPPDGTKERPATTCQELRLCQPHYTDGFYYIDPNQGSPADAL
LLYCNFSGGGQTCLSPVPDQVPVRAWLKDYGKEESFEWLSGLQEGFQFEYSGANVVQMRF
LKLNSNFATQKITHSCHPGLTQSQRESEIKFLADSKRQSFLGTLKECSPPDRLEAGPGSR
EAVFQFDTGDVDLLPVRDLAVFHSGNDGQEFGFTIGPVCFS
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggcggggctggcgcggctgctgtgcgccctgctggcgctgcggtgctgccgggccggc
cggcgcgactcggcggagctggggtccggcgcggcgcctccagaggaagtggatttgctg
gagcagatttcctcccaggctgtgaacaacagtgacgtgtccctggctgaggatgagcag
aagtgcccggtgctgcacatcggccagtacgccacgctgagcctgcccacgcaccacgct
ttcggaccaagcttcgcggatgagttcagcgtgctgctggaactgaggagcgccctgcga
gaggacaccagtgtcctgaccctgctcgaccacggcggccacatcctgctgcagatcaga
ctgaacccctacactctgaccttcgtcaccaccagcaggcgggactacgagttccccgtg
ggcgtgctggcggacggggagtggcaccgcgtggccctgggcgtgtcggcgcggcgcctg
gagctgttcgtggactgtgccctggtggagggcgtggcctggaagaactacttcggcatg
ggcatcgccaccgacgggctgctgatggtcggggggatcgtcgagaccttcgagacgccc
tttgaggggtctttgcggcagatgacctttgtgatgggcgacccagatgctgcccgagag
cactgcgccctctacctccccatctgcgggggggtgtctcccaagccccctcgctccccc
aggatccccaacacgcgcgggctggaggatccagtgctgtcctctaaccatcttgaagac
ttgttggagaactctggaagctccactgacattgagggtctgttcatagatttcgctgct
cagacgccgatgccgccaagggtggctcacccccgcggagacggcacttcgccctcgggc
cccggaagaccgccctccgtcatccgaggcgatgttttcctcatcgaggagggtgacccg
gagaacgggccgctcggcgagagccctcgtgcggggcagcccctgggccgcacctcggac
agcgcggtggaccggccggaccctgccccctcctcccctcccccgccccgccgggggccg
ccgaaggggccccgtggtgggggcgcctcgagagctggcaaaccggactcggcgtccaaa
acccccgaggagaacgtcaccacggacaagcggaaggggcacagcgggtccggggctctg
ggcccgttcccggggaagccgtcggatgacatcatcgacctggactcctcctcctcctcc
tccgtcttgctcaagaagccctccctgcgaaagccccccccgcacggctcccagcccccc
cgccccgactccaaggtgctgatggaggaggagctgctgctcccgactcgcgcgcctccc
agggccggcggcgggcaggggaacagcagcggggggggtgggagcaccctgaccggcccc
gccacccgcaagtacaaagagggcgcggtggtgcaggggtccgacggcaggccctaccga
ctcaagaaaggccccccagggccacctggacccccggggaagaaaggctgctcaggaaga
agaggttatcctggatttaaagggtctaagggctctcaaggtgagatgggacgtaacggg
ctgccgggagaaccaggcctgcccggacccgctgggcttcccaccctgtacctgtggagg
aacacagaggaggagtgggccacgtttcggcaaacctctttcttccagttgctgcaagca
ggctggcctaaagagcaggggcctcctggtcctcctggggaaatggggaagccaggactc
ccgggcatacctggagatccggggccgaggggagctcgtggacccagaggctatgtgggt
gacccgggtccgaagggagtgtccggccgggccggttgccgggggtcagacggcgttcac
gggatcgacggacatgcgggcccgcaggggagacccggcccgcaggggcctcagggttac
aaaggagaaaacgggcccaaaggagagaagggggatgatggtttcgttggccaagtgggt
cctgctggagacggagggaaggaaggagagaagggctcgaagggggagatcggcccgccg
ggtcctgtgggggcgcctggccagcagggcagccgagggtccgcaggactgcaagggcct
cggggaccacctggggagatcgggccgctgggaagagctgggcctcctggcgctgcagga
gacaccgggcctacaggagcggtcggcgcccaggggattaacgggtcgcagggagattct
ggccctgcaggtcctcctggccccagaggccctcaggggccgccggggttacagggagtg
aggggctctcctgggcgacggggacagcagggccagccagggaaagagggatctccaggc
cccaaggggcacatggggacagaagggcctatgggagccagaggagagcacgggttcgag
ggtccgatgggtgaaattggttctccgggtccgaaggggatgccaggtagcagagggagc
agagccccagatggagacaaaggtgatgccgggccaacaggagagcgagggccaatgggt
cctcctggggtcaaaggtcctcttggggtcagtggtcagagtggcttcccaggattccct
gggccaaaaggtcagctaggcacccagggcattcagggtgaagatggagaaactggaccc
cagggtcaggctggcagtggagggtcaaaggggaacagagggccagatggtccgaagggc
aggccaggacccaaagggcccagggggcgcgtaggacagcgtggtctggtcggtgtgtca
ggaatgccggggctgcgaggacagcctggcacagagggaccagaaggaaagcctggtaca
cagggagcagcgggtgcccctgggagtcccggcactgaaggggatcgagggatggggggt
ctgaggggagagccgggacaggggggtcccccaggatctccgggtcccccaggccggccc
ggacaggatgggagccctgggcctctgggcgagaggggtttcactggaaagccaggcgtg
gagggaccgcagggcccagtaggcatgtatggctaccctggcccagtgggtgatcgggga
agacctggccacatgggggaaaggggggagcccggtgttcgaggtccctctgggccccca
ggaaagaaggggaccccaggttctgctggacctcctggggagagaggacccagtggcccc
cagggaatgaggggagagccaggcactaaaggcatcgagggtgtacctgggctgcccggg
ccccccggcccagatggtgagatgggaaagccgggccccccaggagatcagggtcctcag
gggccaccggggagcgaaggccccctcggatatccagggaaggaggggccgcggggcccg
gagggggcagctggagagaagggagacatgggcatcatgggactgccaggtgacccaggc
actgctggactggatggggaacagggtctcccaggacatacgggggctgagggccctgct
ggggtgaagggtgagcagggagacgctggccccagcggtccagccggccccgagggggag
ccaggagcgccggggccccctggcacgaaggggcttctgggagaacctgggcccatggga
aaagagggtgacgtcggtgaccccggagacattggggaccccggacctaaaggtgacaag
ggagcagtaggcccactcggaccccctggccaagcagggcctgcaggtgccgtcgggcag
gtgggagaccggggacagaaaggggagaagggccatgcaggtctcctggggcagtcgggg
ctgatgggagtggccggtctttctggcttcccaggacaggcaggtgaaccaggttctcca
ggaccgctgggacttgatggttcgaaaggagagaagggagaagctgggctcagaggagta
gctggtcattttggtgttgcaggtcctgagggagaccccggggaggacggacagaaaggt
gacccagggaaaccaggccctttgggcgcaaggggcagagagggagcccatggggtcccg
ggctctaagggggtcccgggccctgtggggcccaagggcgagcctggggagaaaggggca
ccaggagagcagggtccggagggtctcccggggatcagagggcccccagcactccctggc
ctcgaggggcctccaggagagatgggcagtcagggtcctccgggatcagcagggccagat
gggctcactggacacccaggtcctgaaggcagtaaaggacgcaaaggagagaagggggaa
gatggagctgagggagacccagggcagccgggacccccaggcaggacggggaagaaagga
aaggctggtttgagaggggcaagaggacccaaaggagaaaagggggtgacaggagagatg
gggctggagggtccaccaggaagacaggggccctacggggtacctggtctgagaggagag
aagggggttcggggtgaagcagggcagaagggggagaaggggaagatgggaccccctgga
ccttatggggatgaaggattcaaggggagacggggtcccccaggggaggagggaccacag
ggaatgaagggggagcagggggatatcggtcctgctggcccacctggatctccaggcctc
ccagggctgcctggcttgtttggagaaaagggccttaaaggctttgctggacctcctgga
ctaaaaggagagaagggacttcctgggacaccagggctccccggtcccccaggagcctcc
ataaatatcacccttgagcagctgaaggccctcatgcacgtgtcggaccagcccaattac
ccactgatcctggccctcctggacgtcctgcaccaggaggtccggctgctcgtggacccc
cctgacggcaccaaggagcgccccgccacgacctgccaggagctgcggctctgccagccc
cactacactgacggcttttattacattgatccaaaccaggggagccccgcggacgcactg
ctattatactgcaacttctccgggggtggacagacctgcctctcaccagtgccagatcag
gtaccagtgagagcgtggctgaaggattatgggaaggaggagtccttcgagtggctcagt
ggattgcaggagggtttccagtttgagtactcgggggccaatgtggtgcagatgcgtttt
ttgaaactcaacagcaactttgcgacgcagaaaatcacccactcctgccaccccggcctc
acacaaagccaaagggaaagcgagatcaaattcctggcagattccaagcggcagagtttt
ttgggcacgctgaaggagtgttcgcccccggacagattggaggccgggcctgggtctcgg
gaggctgttttccagttcgacacgggggacgttgacctgctgcctgtgagggacctggca
gtgtttcacagcggcaacgacggccaggagttcggattcaccatcgggcccgtctgcttc
agctag
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