Lysinibacillus pakistanensis: GDS87_21880
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Entry
GDS87_21880 CDS
T06280
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDS87_21880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpak03019
]
GDS87_21880
03009 Ribosome biogenesis [BR:
lpak03009
]
GDS87_21880
Enzymes [BR:
lpak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GDS87_21880
Messenger RNA biogenesis [BR:
lpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GDS87_21880
Ribosome biogenesis [BR:
lpak03009
]
Prokaryotic type
rRNA helicases
GDS87_21880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QGG53360
LinkDB
All DBs
Position
complement(4551984..4553501)
Genome browser
AA seq
505 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPTERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDILSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTSDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHDALDVVAAALR
TLTKEPDDTPVTITEERPLPMRRERSSNNRGGDRGRNNRSFNGRRDSGRSGDRRGGSRRD
GGRREGGARREGGQGRSRAPRRHED
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagtgaatctacattacgctctgtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgctatcgaaggccgc
gacgtattaggtcaagcacaaactggtactggtaaaactgccgctttcgggattccactt
atcgaaaaaattgacccaaaaaatccaaatatccaagcattagtaattgctccaactcgt
gaattagcaattcaagtatcagaagagctttataaaattggttatgataaacgtgtaaaa
ttattatcagtttacggtgggcaagaaattggccgtcaaattcgtgcactgaaaaataga
cctcaaatcattgttggtacaccaggacgtattattgatcatattaatcgtcgtacgtta
aaattagaagatgtgcaaacattagtactagatgaagcagatgaaatgttaaacatgggc
tttatcgatgatattaattcaattttagaaaacgtgccgactgagcgtcaaacattactg
ttctcagcaacaatgccaccagctattcgcaaaattgctgaaacattcatgcgtgatcca
gaaatcgtaaaaattaaagcaaaagaattaacagttgataatattgatcaatattttgtg
aagtctgctgaacgcgaaaagttcgacattttatctcgcttattaaacgttcaccaacca
gagcttgctatcatctttggacgtacaaaacgtcgcgtggatgagcttgcacaggcccta
tcaattcgcggatacttagcagaaggtattcatggtgatttaagccaagcaaaacgtatt
tcagtattacgtcaatttaaagaaaataaaattgatattcttgttgccacagatgtagct
gcacgtggacttgatatttctggtgtaacacatgtttataattttgacattccacaagat
cctgaatcatatgttcaccgtattggtcgtacagggcgcgcaggtaaatcaggtcttgca
gtaacatttgtaacacctcgtgaaatgggttatttacgtattgttgaggaaacaacgaaa
aaacgtatgacaccacttcgtccaccaacttctgatgaagctcttgaaggtcaacaacgg
ttagctgtagagacgctagaaggtcttatcgcgaataataatctaggtgattatcgtaca
tttgcagcagaattacttgaaaatcatgatgcgcttgatgttgttgctgctgctcttcgt
acattaacaaaagagccagatgatacaccagtaactattacggaagaacgaccattacca
atgcgtcgtgagcgttcttctaacaatcgtggcggagatcgtggacgtaataaccgtagc
tttaacggacgtcgagatagtggacgtagcggagaccgacgtggcggaagtcgtcgagat
ggcggacgccgtgaaggtggtgctcgtcgtgagggtggacaagggcgctctcgtgcacca
cgacgtcacgaagattaa
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