Legionella pneumophila Corby: LPC_1974
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Entry
LPC_1974 CDS
T00532
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lpc
Legionella pneumophila Corby
Brite
KEGG Orthology (KO) [BR:
lpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPC_1974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpc03400
]
LPC_1974
Enzymes [BR:
lpc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPC_1974
DNA repair and recombination proteins [BR:
lpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPC_1974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABQ55904
LinkDB
All DBs
Position
complement(2994535..2995425)
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AA seq
296 aa
AA seq
DB search
MMIEKVEITHPDKMIFSGAQISKSEVAEYYSRIANFILPWVNERPVTLKCYPNGINKEGF
FIKHAPDYFSDSIHRVSIPLKKTDAHIEMIRIDKAEDLVYLVEQNTIELHIPLAKITDVK
KPDQIVLDLDPSDDDFEKVRHAALLLKEILDLLQLPAFIKTTGSRGVHIHIPIKPYYSFL
EIKAITKQIAERLHQQSTDTTTLEQRKNKRGNKVFIDYLRNDYGMTAVAPYSLRALENAP
IATPIDWSELQDNALGPRSYHLKNIFRRLAQKQDPWANFVQSSVAIQCRDIGSNIF
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgaaaaggttgaaattactcatcctgataagatgatattttctggcgcccaa
atttcaaaaagcgaggtagctgagtattacagccgaatagcaaattttattttaccctgg
gtaaatgaacgaccggtaaccttaaagtgttatcctaatggaatcaataaggaaggtttt
tttataaagcatgcgccagattatttttcagattccattcatcgtgtttctatcccgctg
aaaaaaactgatgcgcatattgaaatgatcaggattgataaagcggaagatctggtttat
ctcgttgagcaaaatacaatagaattgcatatacccttagcaaaaataacggatgttaaa
aaaccggatcaaattgttctggatctggatccgtcagatgatgattttgagaaggtacgg
catgccgctttattgttaaaagaaatcctcgatttgttacaattgcccgcatttataaaa
acgaccggttcacgtggtgtacatattcatattccgataaaaccttactattcttttctt
gaaataaaagccattacaaaacaaatagcagagcgattgcatcagcaatccactgataca
acgactctcgagcaacgcaaaaataaacgcggtaacaaggtatttattgactatttgaga
aatgattatggaatgacagcagttgcaccttattcactaagagcacttgaaaatgcacct
atagcgactccaattgactggagcgaattgcaagacaatgctcttggtccccgcagctat
catttaaaaaatatatttcgtcgccttgcacaaaaacaagatccatgggcgaattttgtg
caaagctctgttgctattcaatgccgggatattgggagcaatattttttaa
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