Lolium perenne (perennial ryegrass): 127300207
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Entry
127300207 CDS
T08650
Name
(RefSeq) uncharacterized protein LOC127300207
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127300207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lper03000
]
127300207
03019 Messenger RNA biogenesis [BR:
lper03019
]
127300207
04121 Ubiquitin system [BR:
lper04121
]
127300207
Enzymes [BR:
lper01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127300207
Transcription factors [BR:
lper03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127300207
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127300207
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127300207
Ubiquitin system [BR:
lper04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127300207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
zf-UDP
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
127300207
NCBI-ProteinID:
XP_051186250
LinkDB
All DBs
Position
5:complement(109527462..109534762)
Genome browser
AA seq
1171 aa
AA seq
DB search
MMTMSDDGDRTCPLCAEEMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR
TRYDKDRIVKMAAATCDRTAVADKNTDKKQKTQKVKSKALTVEAKKHLASVRVIQRNLVY
IIGLPANLCNESVLERREYFGQYGKVLKVSVSRPTGTPSQQQTAANNGISVYITYAKEEE
AIRCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEI
ISAYTRSRVPQMASTVSQRRAGTVLPPPADDFSYSAVVSAKHTIKNGTTNTTSQSRLSPP
NSSSGRSTLPPATSWGHRDLNTRTSATEVASSQSLVKSKSEAQSNSYSSSSMISSARLPS
SWNDDTSTVPKLTEGRQVSERDSLSKTLKPYRPGIAKETQAATSLESSLDIDFSTIPSAW
NDDEVVASDEASKGSEEKQVVNGQLVPPASSNPTEPGQLVSKSSSSTTNNAAALNSSKQS
LTDCVSRSAISNSDVKGGNGDHQFTNMGPKNPTLRTINSQPNHTASESRPRDTEVDKLSV
GVSSLTLDSKDKVHSKEENQQPGAVLNMSVPLSQTLNNEQSHLKLAGLLSSENKDSVFSS
QSSSDKHLDWSSELQSSRATSPLNDIWNSSVATDKSHVRMLDTTDQTSSSSYVPTANTSH
ISLWNDKEINRTSTSDNRSSGTMMYTGLLSSTDNNSTLLNGRQEGLGPMYTPGMVSEHSG
MRSHQHGLLDAARNDNVGGFGKAIGGNKDEGSIISDILSLEFDPWDESYSTANNFVKMLN
ESEKNDAPSWKSKGSSNESRFSFARQDNQRNFQDSSFRNPGSDQNFSLLSQNSHGNFYQN
GAVFQSSEEEFSKSNPLAMPDIATAGSSRSKISAPPGFSAPARVPPPGFSSQDGLNPPPG
FSSGFSSQDMLNPPHGFPSGFSSQAGSNPPHGFSSQAGSNPPHGFSSQAGSNPPRGFNSG
FSSQDVSNIPPGFSAGFSSQNGSNQAYGSTYSETRLLDNLFGSHTNQYQPQMSRHSSDIE
FIDPAILAVGKGRMPGVSDSGLDLKNAPFSTQLQTSNNDPRLQLLMQQSMPPHQNLRYPD
HGQDSFNSMNDNYLASRLLPQNHGSLSSYAQMSLQQPRNSQLANGHWDGWSDLRQGNNVP
MSDMSRMLYPTEANNFHMLGSNDIYNRTFGF
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgagcgacgacggagaccgcacctgcccgctctgcgccgaggagatggac
atcactgaccagcagctcaagccctgcaaatgtggctacgagatttgtgtctggtgctgg
caccacatcattgatatggcggagaaggaggacacggaggggcgttgccctgcttgccgc
acgcgctacgacaaggacaggattgtcaagatggcagctgccacttgtgacaggacggct
gtagcagataaaaacacagacaagaaacagaagacccaaaaggtcaagtcaaaggcacta
actgtggaagctaagaagcatctcgccagtgtcagagttatacagaggaacctcgtgtat
ataattggactgcctgcaaatttatgcaatgagagtgtactggagcgcagggaatacttt
ggtcagtatgggaaggttttgaaggtttcagtttctcgtccaactgggactccttcccag
cagcagacagcagcaaataacggtatcagcgtatatattacttacgccaaagaagaagag
gccatccggtgtattcaggctgtacacaattttgtcttggaagggaaagtgctaagagca
tgctttggtactacaaaatattgccatgcatggctgcggaacatgacatgtgggaatcca
gattgtctctatttacatgatgtaggcagtcaggaggatagtttcactaaagatgagata
atctcagcatataccaggagtagggttcctcaaatggcgtctactgtttctcaaagacgc
gcaggaactgtattgcctcctccagcagatgatttctcttatagtgcggtggtttcagcc
aaacatacaatcaagaatggaacaactaatacaacaagccaatcaagactgtcacctcca
aacagtagttcagggaggtccacactgccaccagctacttcatgggggcatcgtgatctg
aacacaaggacatcagcaactgaggtggcatcctcacaatctcttgtaaaatcaaaatca
gaggcacagagtaattcatattcgagttcttctatgatttcgagtgcaaggctaccttct
tcatggaatgatgatacaagcacagtaccaaaattgactgaaggacgacaagtatcagag
cgagatagtctatctaaaaccttgaagccgtatagacctggtattgcaaaggaaacccaa
gctgcaacatcactggagtcgtcattggacatagacttttctacaataccttcagcttgg
aatgatgatgaagttgtagcatcagacgaagcgtcaaaaggaagtgaggaaaaacaagtt
gtaaatggacagcttgttcctccagcgtcttcgaatccaacagagccaggccagcttgtg
tctaagtcatcatcatcaacaacaaataatgctgcagcgttaaacagttccaagcaaagt
cttacagattgtgtgtcacgttcagcaatatctaattcagatgtaaagggtggtaatggt
gaccaccagtttaccaatatgggtcctaaaaaccctactttgagaactataaacagtcaa
ccaaatcacactgctagtgagagtagaccccgggacacagaagtcgataagttatctgtt
ggagtatcttcactaactttagatagcaaagataaggttcatagtaaggaagaaaaccaa
cagccaggtgcggttcttaatatgtcggtgcctttgagtcaaactttgaacaatgaacaa
tctcatttgaagcttgccgggcttttgtcatcagaaaataaggactctgtattttcttct
caatctagttctgataagcatcttgactggagttcagagctgcaaagttctcgtgcgact
tctcctttaaatgacatatggaattcttctgtggccactgataaatcccatgtcaggatg
ctggatactacagatcaaacatcatcttcatcttatgtccctactgctaatacatcacat
atttctttgtggaatgataaagaaattaaccgtacttcgacaagtgataatagatcttct
ggcaccatgatgtacactgggctgctatcttcaacggacaacaattctaccttgttgaat
ggacgtcaagaggggctagggcctatgtatacgcctggtatggtttccgaacattctggt
atgagaagtcaccagcatggactactggatgcagcaagaaatgataatgtaggaggtttt
ggcaaggctataggtggaaataaggatgagggcagtataatatctgatattttgtctttg
gagtttgatccatgggatgagtcatattcgactgctaacaattttgttaagatgctcaac
gaatctgaaaagaatgacgcgccttcatggaaatcaaaaggcagcagtaatgagtcgaga
ttttcatttgctagacaggataatcaacggaatttccaggattcatctttcagaaatcct
ggtagtgatcagaatttcagtttgctatcccagaactctcatggcaacttttatcagaat
ggcgccgtcttccagtcttctgaggaagagttttcaaagagcaatcctcttgctatgccg
gatatagcaactgctggctcttcaaggtccaaaatatctgcacctcctggattttcggca
ccagcgagagttccccctcctggattttcatctcaggatgggttgaatccaccacctgga
ttttcttcaggattctcatctcaggatatgttgaatcctcctcatggatttccttctgga
ttttcatctcaggctggatctaatccccctcatggattttcatctcaggctgggtctaat
ccgcctcatggattttcatctcaggctgggtctaatccacctcgtggatttaattctgga
ttttcttcccaggacgtgtctaatatccctcctggcttttctgcgggattttcatcccag
aatgggtctaaccaggcatatggctcaacatactcagaaactcgtctactcgataatctt
tttggtagccacaccaatcagtatcaaccacagatgtctagacactcaagtgacatagaa
tttattgatcctgctatactggctgtgggcaaagggcggatgccaggagttagtgattca
gggttggatttaaaaaatgctccattttcaacacagttgcaaacatcaaataatgatcca
aggcttcagttacttatgcaacagagtatgccccctcatcaaaatctcagatatccagac
catggtcaggattcattcaactctatgaatgataattatctggcatcccgacttttgcca
cagaaccatggttctttatcctcttatgcccagatgtcactccaacaacccagaaactca
cagcttgcaaatggtcactgggatggctggagtgatttgagacaggggaataatgttccc
atgtcagacatgtcgaggatgttatacccaactgaagcgaacaactttcacatgctgggt
tcaaatgatatatataacagaacctttggattttaa
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integrated database retrieval system
