Lactiplantibacillus plantarum JDM1: JDM1_1910
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Entry
JDM1_1910 CDS
T00946
Symbol
rhe3
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lpj
Lactiplantibacillus plantarum JDM1
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpj03019
]
JDM1_1910 (rhe3)
03009 Ribosome biogenesis [BR:
lpj03009
]
JDM1_1910 (rhe3)
Enzymes [BR:
lpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JDM1_1910 (rhe3)
Messenger RNA biogenesis [BR:
lpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JDM1_1910 (rhe3)
Ribosome biogenesis [BR:
lpj03009
]
Prokaryotic type
rRNA helicases
JDM1_1910 (rhe3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ApbA
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ACT62797
LinkDB
All DBs
Position
complement(2024016..2025359)
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AA seq
447 aa
AA seq
DB search
MTASFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLP
MINQLNADERYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQIEKL
NRHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMPADL
QMLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLLT
IGEPYLVLIFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVA
TDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEAKVSAVE
AMGIKFKPKAIRDGEIVDSYDRNRRAKRGPKQEKLDPTLIGYVKKSKKKIKPGYKRRIRK
KISDKARMDRRIEQRAAARKERKDRKS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaagttttgaagattttaaattgcagccgttcttgatgcaggcactgactgac
atcaatttccgcaaaccgactgcggtacaggaaaagttgattccagtgattgctgctggc
cgcagcgtcatcggtcagtcagcaactgggagtggtaagacgcatacgtttttactgcca
atgatcaatcaactgaatgctgatgaacgttacgtgcaggcagttatcacaacgcccagc
cgtgaattagcttatcagattcagactgctgctaaacagttgatccaacacagcccgaaa
gccattcacattggactctatgtcggtgggactgataagcaggaacagattgaaaagcta
aatcggcaccaaccacagttgattattgggaccccaggacggattctggacttaatgcgc
tcccaggcactcgatgtgcatcgtgcgactcagctagtagttgatgaagccgatatgacg
ctagacttgggctttttgaacgtggttgaccagattgctggccgaatgcctgctgattta
caaatgttggtgttctcagccacgatgccacaaaaattaacgccatttttgcgcaagtac
atgaacaatccagttatggaagaaattccagtagaatctgtgattagtccgactattgat
aactggctgatttccaccaagagtcacgataaaaacagtattatttatcgcttgctgacg
attggtgaaccgtatctcgtgttgatttttgctaacacgaaggaacgagttcaagagttg
acccattatttgcgccaacaaggtttaacggtcgcaatgatccatggagatattcaacca
cgtgaacgaaagcgggttatgcgcgacgtccaacaattgaagtatcaatttgttgttgcc
actgatctagctgcccgtgggattgatattgaaggtgtttcacacgtcatcaatgatgat
attccgaatgacttagaattcttcattcaccgtgttggccggaccggccggaatggaatg
gcggggactgcgattacgttatatagcccaggcgaagaagccaaggtcagtgcagttgaa
gcaatggggatcaagttcaaaccgaaggcgattcgtgatggtgagattgtggattcatat
gaccgtaatcgtcgggctaaacgggggccaaaacaggaaaaactggacccaaccttgatt
ggttacgtcaaaaagtccaagaaaaagatcaagccgggttacaaacgccgcattcgtaaa
aagatcagcgataaggcgcggatggaccgccgcatcgaacaacgagcggctgcccgcaag
gaacgcaaggatcgtaagtcttaa
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