Luteibacter pinisoli: FIV34_07580
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Entry
FIV34_07580 CDS
T06035
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lpy
Luteibacter pinisoli
Pathway
lpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV34_07580 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpy03019
]
FIV34_07580 (rnr)
03016 Transfer RNA biogenesis [BR:
lpy03016
]
FIV34_07580 (rnr)
Enzymes [BR:
lpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FIV34_07580 (rnr)
Messenger RNA biogenesis [BR:
lpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIV34_07580 (rnr)
Transfer RNA biogenesis [BR:
lpy03016
]
Prokaryotic type
tRNA degradation factors
FIV34_07580 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Rho_RNA_bind
HC2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QDE39070
UniProt:
A0A4Y5Z187
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All DBs
Position
1644486..1647230
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AA seq
914 aa
AA seq
DB search
MTKKNKGSGAPQGPRKPKASRPGKALDKYRDRQPGAVVTDPHAAREAQRYDTPIPSREAI
LALLEERGELMIAEDIARALRLFTDYEINALDKRLGAMVRDGQLLRNRRNGYAPAQKLSL
IPGRVIANAEGYGFLRPDEGGEDLYLSPSQMRTVLHGDRVLASVVGIDRRGRRQGAIVEV
LERRSPRLVGRVVVENGVMLVEPDDRRLHQNIMIPAGRDAGAHSGEIVVVEITEPPTPHR
GPLGTIRAVLGARLQPSLVVEMAIASHDLPNEWPPQVIRQAEEVEPKVTAAERKGKVDIR
DLPLVTIDGEDARDFDDAVYAEQLKNGGFRLIVAIADVSHYVPVGTVLDAEAYERSTSTY
FPGFVVPMLPETLSNGICSLNPRVDRLCMVCDMEVDAEGEVTHSKFYEAVMYSHARLTYN
KVWQAVGERNADVRQEIADVLPQVETLHRLYKAMAKARKRRGAIDFETPEVKFRLTPSGD
VVSMGASDRNDAHKLIEECMIAANVQAAKFLSKRKIPALYRVHAPPPVEKYEDLLQFLRE
FKLKLPPADEVTPADFSALLKKVHDRPEAELIQSVLLRAQSMAVYLPSNDGHFGLALDAY
AHFTSPIRRYPDLLVHRAIRYALTKGKPADYEYTEAQMAAMGVHCSQRERRAEEAERDVD
ERFKCAWMEKHVGEEFAGTITGVTSFGLFVELAASRVSGLVHVSQLPNDYYKFDPVRHLL
AGERSGASYRLGDYVSVQVLRASMEDRKIDFRLVSRLQSLPKPTPLPPAPLPPVKPVGTV
AQVGKAFGRAVRKVADTLTGKKSKKAVAAPAPVVEHALPSLPPVPGARKAADKRPASRKP
VVEQAPPPKAPSKRGGPRQPTPKQAPAASAPAKRAPVKQAAAKQAPTKQAPAKQAPTKQA
AAKKAAPRNPRSKS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaagaaaaacaaaggttccggtgccccgcaagggcctcgtaaacccaaggccagc
cgccccggaaaggcgctggacaagtaccgcgaccgccagccgggcgccgtggtaaccgat
ccccatgccgcgcgcgaagcgcagcgctacgacacccccatccccagccgcgaggccatc
ctggccctgctggaagagcgcggcgagctgatgatcgccgaagacatcgcccgcgccctg
cgccttttcaccgattacgagatcaacgcgctcgacaagcgccttggcgcgatggtccgc
gacgggcagctgctgcgtaaccgccgtaacggctatgcccccgcacagaagctcagcctg
atccccggccgcgtcatcgccaacgccgagggctacggcttcctgcgcccggacgagggc
ggtgaagacctgtacctgtcgccctcgcagatgcgcaccgtcctccacggtgaccgcgtg
ctcgccagcgtcgtcggcatcgatcgccgcggccgtcgccagggcgccatcgtggaagtg
ctcgagcgtcgctcgccgcgcctcgttggccgcgtcgtcgtcgaaaacggcgtgatgctt
gtcgagccggacgatcgccgcctgcaccagaacatcatgatcccggccggccgcgatgcc
ggtgcccattcgggcgagatcgtagtcgtcgagatcaccgagccgccgacaccgcaccgt
ggcccgctgggcaccatccgtgccgtgctgggtgcgcgcctgcagccgtcgctcgtggtc
gaaatggccatcgccagccacgacctgcccaacgaatggccgccgcaggtcatccgccag
gccgaggaagtggaaccgaaggtcaccgccgccgagcgcaagggcaaggtcgacatccgc
gacctgccgctggtgacgatcgatggcgaagacgcgcgcgacttcgacgatgccgtttac
gccgaacagctcaagaacggtggcttccgcctcatcgtcgccatcgccgacgtctcgcat
tacgtgccggtgggtacggtgctcgacgccgaggcctatgagcgcagcacgtccacctat
ttcccgggcttcgtcgtgccgatgctgccggagacgctctcgaacggcatctgctcgctg
aatccccgcgtggaccgcctctgcatggtctgcgacatggaagtggacgccgaaggcgaa
gtcacccattcgaagttctacgaagcggtgatgtattcgcacgcgcgccttacctacaac
aaggtgtggcaggccgtgggcgaacgcaacgccgatgtccgccaggaaatcgccgacgtg
ctgccgcaggtggaaaccctgcaccgcctgtacaaggccatggcgaaggcacgcaagcgt
cgcggcgccatcgatttcgaaacgccggaggtgaagttccgcctcacgccgtcgggcgac
gtggtgtccatgggcgccagcgatcgcaacgatgcgcacaagctgatcgaagaatgcatg
atcgccgccaacgtgcaggccgcgaagttcctttccaagcgcaagatcccggcgctgtat
cgcgtgcatgcgccgccgccggtcgagaagtacgaagacctgctgcagttcctgcgcgag
ttcaagctgaagttgccgccggccgatgaagtcaccccggccgatttctccgcgctgctg
aagaaggtccatgaccgtccggaagcggagctgatccagtccgtgctgctgcgtgcgcag
agcatggcggtgtacctgccgtccaacgacggccacttcggcctggcgctggacgcgtat
gcgcacttcacctcgccgatccgtcgttatccggacctgctcgtccatcgtgccatccgc
tatgcgctgaccaagggcaagccggccgattacgagtacaccgaggcgcagatggctgcc
atgggcgtgcactgctcgcagcgcgagcgccgtgccgaggaagccgagcgcgatgtcgac
gagcgcttcaagtgcgcgtggatggaaaagcacgtgggcgaagagttcgccggcaccatc
accggcgtcacttcgtttggcctgttcgtggaactggccgcgtcgcgtgtgtcgggcctg
gtgcatgtctcgcagctgccgaacgactattacaagttcgatccggtacggcacctgctc
gccggcgagcgctccggcgcgagctatcgcctgggtgactacgtgagcgtgcaggtgctg
cgcgcgagcatggaagaccgcaagatcgacttccgcctcgtctcccgcctgcagtccctg
ccgaagccgacgccgctgccgcccgccccgttgccgccggtgaagccggtgggcaccgtc
gcccaggtcggcaaggccttcggccgcgccgtgcgcaaggtggctgacacgctcaccggc
aagaagtcgaagaaggcggttgcagcaccggcgccggtcgtggaacatgcgctgccttcg
ctgccgcccgtgccgggtgcacgcaaggccgccgacaagcgtcctgcctcgcgcaagccc
gtggtcgagcaggccccgccgccgaaggcaccgtcgaagcggggcggcccgcgccagccc
acgccgaagcaggcgcccgcggccagcgcgccggcgaagagggcacccgtgaagcaggcc
gccgcgaaacaggcgccgacgaaacaggcgcccgcgaagcaggcccccaccaagcaagcc
gcggccaagaaagctgcgccgcgcaaccccaggagcaagtcgtaa
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