Lolium rigidum (rigid ryegrass): 124655521
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Entry
124655521 CDS
T09103
Name
(RefSeq) pre-mRNA-splicing factor 38-like
KO
K12849
pre-mRNA-splicing factor 38A
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124655521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124655521
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124655521
Complex C
U4/U6.U5 tri-SnRNP related factors
124655521
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
124655521
NCBI-ProteinID:
XP_047050351
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All DBs
Position
5:complement(143959062..143964599)
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AA seq
390 aa
AA seq
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MANRTDPLARSVHGTNPQNLIEKIVRSKIYQTTYWKGECFGLTAETLVDKAMELDHTGGT
HGGNRRPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTGTIADVYQYL
EPLYNDYRKIRQKLNDGKFTLTHVDEFIDELLTKDYCCDTALPRIQKRWVLEASGTLEPR
RSALEDDFEEEEEDKEEGEPMDVDEPNTREKEHHRGRSPAKERDRERDRDRKHERHHRDR
DHDRDRDYDRDHGRGRDRDRDRDRGRERERERDDRDRHRIRDDDYSRDRDRERDGRERER
RDRDRGRHRSRSRSRDRRDRDREDGEHRRRRGRGSGSPRGPAEDDGPREDPKKRKEKKEK
KGGGNGPDPNDPEIIAMNKLRASMGMGPLK
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgcacggaccccctggcccggagcgtccacggcaccaaccctcagaacctg
atcgagaagatcgtgcggtccaagatctaccagaccacctactggaagggcgagtgcttc
ggcctcacggcggagaccctcgtcgacaaggccatggagctcgaccacaccggcggcacc
cacggcggcaaccgcaggcccacccccttcctctgcctcgccctcaagatgctccagatc
cagcccgacaaggacatcgtcgtcgagttcatcaagaacgaggattacaagtatgtccgt
gttcttggcgcgttctacctgcgcctcaccggcaccatcgccgacgtctaccagtacctc
gagccactctacaacgactaccgcaagattaggcagaagctcaacgatggaaagttcacg
ctgacgcatgtcgacgagttcattgatgagctgctgaccaaggactactgctgcgacact
gccctcccccgcattcagaaaagatgggtccttgaagcttctggaactctagagcctaga
agaagtgcacttgaagatgattttgaggaagaggaggaagataaagaggaaggggagcct
atggatgtagatgagcctaacactcgcgaaaaggaacatcaccgtggaaggagcccagct
aaagagcgggacagggagagggatagggataggaagcatgaaagacatcacagggaccga
gatcatgacagagatcgggattatgacagggaccatgggaggggacgggacagagatcga
gaccgagacagaggccgtgaaagagagagagagagggatgatcgagaccgtcaccgcatc
cgagatgatgactatagccgagatagagacagagagagggatgggagggaaagggagcgc
cgggacagagaccgtggcaggcaccggagccgttcaaggagccgggatcggcgagacaga
gaccgtgaagacggagagcaccgtagaagacgtggccgtggtagcggcagtcctcgaggg
cctgctgaggatgatggcccgagggaggaccctaagaagcgaaaggaaaagaaagagaag
aagggcggcgggaatggtcctgatcctaacgatccagagattatagcgatgaacaagctg
cgagcgtcgatggggatggggccactgaagtag
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