Lolium rigidum (rigid ryegrass): 124667959
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Entry
124667959 CDS
T09103
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124667959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124667959
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124667959
mRNA degradation factors
5'-3' decay
Decapping complex
124667959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
124667959
NCBI-ProteinID:
XP_047061135
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Position
6:complement(97333544..97340383)
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AA seq
806 aa
AA seq
DB search
MLGVEADSGGGGGGGASSSSAADSFDAGQYAFFGKEPREGLELGCLEVDGGHGNGGGFSG
AEEGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGTRNPGVIGDRRSISRGSSLT
VDWAEDAEFPNYQDILENEEFQDGKRWWSQSHSMVQPGDSKPLSRTTSYPQQPLQHRLSE
PITAPKSPPFTSFPPPGGRSPYPAQGLTRHGSIPSFGAGVQMGSPSMQLPGSPYNMVGLP
HGLPYGGSMPFGGPNLHVSNPMQNDWSNQANLFSGEHLNLLPNLLQKQISLPNNPMSSLL
FSQQQQRLAQLQPSHQNYLNIPPHLFYHHHPPEMTGRFESATSLPSSRDKRSRSGRGKHS
LRFSQPPSDTTGSQNGESGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQACI
AKKGTSTKQKTNFAPTSMKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVDLP
SSGEGSHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVEDIDRLLQSSQAQENSFQLRRR
RQVLLEGLAASLQMVDPLGPSKSAQSSGLALKDDIVFLRIVSLPKGRKLLARYLRLVVPG
SELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSSCVHHMELGALSACLAAVVC
SSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQNTVSSYTPSNRALWQASFDAFFGL
LTKYCLSKYESILQMFVMQASGSVIGSEASRATSREMPVELLRASLPHTNEQQRQMLLDF
AQRTTPASSFNPPGASGHITSESVPG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgtcgaggcggacagcggcggcggcggcggcggcggcgcttcctcctcctcc
gccgcagatagttttgacgcggggcagtacgccttcttcgggaaggagccgcgcgagggg
ctcgagctcggatgcttggaggttgacggtggccatggcaatggcggtggattcagcggg
gcggaagaggggctgtaccgtctctcctcggttggagaagagattgataatttaagcaac
ttgtcggacgtcgatgatctcgcgagcactttcgctaagttgaaccgaacagttagtgga
acacggaatcctggtgttattggtgacagacgatccatctcaagaggaagttctttaact
gttgattgggctgaggatgcagaatttccgaattatcaggatatattagaaaatgaggaa
ttccaggatggtaaaagatggtggtcgcagtcacattctatggtgcagccaggggactct
aaaccattaagccgaacaacctcctatcctcagcagccactgcagcaccgtttaagtgaa
cctatcacagcaccaaagtctcctccatttacctcgtttccacctccaggtggcagatca
ccgtatcctgctcaaggtcttacacgtcatgggagcattccatcatttggagcgggagta
cagatgggttctccgagcatgcagctgccaggttctccgtataatatggttggattacct
catggactaccatatggaggaagcatgccttttggtggtcctaatctgcatgtaagcaat
ccaatgcaaaatgactggtccaaccaggccaacctgttcagtggggagcatcttaatcta
ctgccaaacttattacagaaacaaatatcacttccgaataacccaatgtcatcactgcta
ttctctcagcaacagcagagattggcgcagctccaaccatcacatcagaattacctgaat
ataccaccccatctgttctaccaccatcatcccccagagatgacaggtaggtttgaatct
gctacaagtcttccttcatcaagagacaagagatcacgatcaggaaggggaaaacacagt
ttgcgtttttctcaaccaccgtctgatactactggtagtcagaatggtgagagtggtgga
ctaaagttcagatccaagtacatgtcatctgaagagatcgagtctatcctaagaatgcag
cactcagcaagtcacagcagtgatccttatgttgttgattattaccaccaagcttgcatt
gcgaaaaagggtactagtactaagcaaaagaccaatttcgccccaacatcaatgaaagat
ttgccttccaagtcccggtcaagtggtgatcagcatgcatatcttcaggttgatgctctt
gggagagtttctttctcttccatacgcaggcctcggtctcttcttgaagttgaccttcct
tcatcaggtgagggttctcatgatcagaagtcttctgtgaggtctctggagaaagaacca
atgctggcagccagggtcactgttgaagatgccattggtcttcttcttgaggtggaagat
attgacaggctcctgcagtctagccaggcacaggagaacagtttccaactgaggcgaagg
cgacaagtcctccttgaaggtctagctgcatcacttcagatggtcgaccctcttgggcct
agcaagtctgctcaatcatctggtttagccctgaaggatgatattgtcttccttcgcatt
gtttctcttcccaaaggacgtaagcttctggctcgttacctccgacttgttgtccctgga
agtgagttgacgaggattgtatgcatggctattttccgacatctgaggttcttgtttggg
ggtttaccatcagattcgagtgcagcagagacaacagttgctctggcaaagactgtttca
tcttgtgttcaccatatggagctcggcgctcttagtgcttgccttgctgcggtagtctgt
tcatctgaacagccacctctccgtcctcttggtagctctgctggcgatggggcttctctt
attattaaatcagtactggatcgagcaactgaattactgactgatcagaatactgtatcc
agctataccccgtcaaacagagctctctggcaggcatcattcgacgctttctttgggctt
cttacaaaatactgtctcagtaagtatgaaagtattctgcagatgtttgtcatgcaggca
tcgggctctgtcattggatccgaagcctcccgagcaactagcagggaaatgccagttgaa
ctactacgcgcaagccttcctcatacaaacgaacagcaacgccagatgctgctcgatttt
gctcagagaaccacgccagccagcagttttaatccccctggtgctagtggacacatcact
tctgaatcagttcctggttga
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