Lolium rigidum (rigid ryegrass): 124685044
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Entry
124685044 CDS
T09103
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124685044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124685044
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124685044
Complex C
U4/U6.U5 tri-SnRNP related factors
124685044
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
124685044
NCBI-ProteinID:
XP_047075282
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Position
1:21611494..21615939
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AA seq
414 aa
AA seq
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MEIQTSGRPIEVLMEKVLSMNITSSDYFKELYKIKTYHEVIDEIYHQVDHVEPWMTGNCR
GPSTAFCLLYKLFTMKLTMNQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWTWYEPYIE
DDEEFSPGSNGKMTTMGVYVRDVILGQYYFDSLLPRVPLLILRQVTAHLEKMKLPTKQSG
ITGDSSRLGSDDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRKTLPSIRERERSHDG
GSARSPPRKHRSQSRERSRDTERDRSDRDRGRYKDREQGRQSRDDRDRDYRRSSYSERDV
ERRGHDRRDRDSDRNGRSSARRSRSRSPSRGRTNGDSHRSSPFGKAPESSNLAKLKDLYG
DATNAKDDAGDDRARRDSGTEEVIRLGGARWRDTQHMMGLFSPELSCLGKCQIC
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagacgtccgggaggcccatcgaggtgctcatggagaaggtgctgtccatg
aacatcacctcctcggactacttcaaggagctctacaagatcaagacctaccacgaggtc
atcgacgagatctaccaccaggtcgaccacgtcgagccctggatgacgggcaactgccgc
ggcccgtccaccgcattctgcctcctctacaagctattcaccatgaagctcaccatgaac
cagatgcacgggctgctcaagcaccccgattccccttacatcagagctattgggtttctc
tacttgcgttacgctgcggacccaaagaccttatggacttggtatgagccttacattgag
gatgatgaggagttctcccctggatccaatggcaaaatgacaactatgggcgtttatgtg
cgcgatgtcatccttggtcagtactacttcgacagtcttcttccacgagtgcctctccta
attttgcgacaggtcactgcccatcttgagaagatgaagctcccaacaaaacagtcagga
atcactggggattctagtcgccttggttcagatgatactgcccggaggccaccttcggta
aaggcttctttgtctgtctcttttggtcagcgtgctccgcaccgtgcatccacaaggggc
tcatccccagtccgaaagacactgccatctatacgtgaaagggaaaggagtcacgatggt
ggtagtgcaagatctccacccaggaagcaccggagtcaaagtcgtgagcgtagccgtgac
actgagagggaccgttcagatcgtgaccgtggtaggtacaaggacagggagcaaggtcgg
cagagccgtgatgacagagaccgtgattaccgccgctcaagctattcagaaagggatgtt
gagaggcgaggccatgataggagggacagggactctgaccgaaatggacgctccagcgcc
cgcagaagcaggagcaggagtccaagccgcggcagaaccaatggcgacagccatcggtct
agcccgtttggtaaagcaccagagtcatccaacctggcaaagctgaaggatctgtatggc
gacgcaacaaatgcaaaggacgatgctggcgatgatagagctcgcagggattctggaacc
gaagaggtgatcagattgggaggtgccaggtggagagatacgcaacatatgatgggatta
ttctcccctgagctgtcatgtctagggaaatgtcaaatctgttag
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