KEGG   Lolium rigidum (rigid ryegrass): 124699178
Entry
124699178         CDS       T09103                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03013  Nucleocytoplasmic transport
lrd03015  mRNA surveillance pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124699178
  09122 Translation
   03013 Nucleocytoplasmic transport
    124699178
   03015 mRNA surveillance pathway
    124699178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124699178
   03041 Spliceosome [BR:lrd03041]
    124699178
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     124699178
    TREX complex
     124699178
Spliceosome [BR:lrd03041]
 Complex C
  Other components
   EJC/TREX
    124699178
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124699178
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 124699178
NCBI-ProteinID: XP_047087477
LinkDB
Position
3:238602097..238604244
AA seq 263 aa
MADALDMSLDDIITKNKPSHSRGRGRRNPASASGGSAPARRRFHRRAANRSAAAPYHQLN
FQPQQVPPAFGYVAQPMAMVTAPSTGLDTAPTKLYISNLDSNVSNEDIKDLFSEMGEIKR
YSINYDKSGRSKGTAEVVFSTKAEASAALKKYNNVHLDGKPMKIEVIGTNIEAPPPAIFA
FAPPPLPGNFNFPPKSGPGRGAGGRGWHRGGGGFTGHGRGRDGGRGRGASRGRGRGGRGN
VEVSAADLDADLDKYHSAAMQTS
NT seq 792 nt   +upstreamnt  +downstreamnt
atggcggacgccctggacatgtcgctggacgacatcatcaccaagaacaagccctcgcac
agccgcggccgcggccgccgcaacccggcctccgcctcgggaggatccgcgcccgcgcgc
cgccgcttccaccgccgcgccgccaaccgctccgccgcggcaccctaccaccagctcaac
ttccagccgcagcaggtgccgccggctttcgggtacgttgcccagccgatggccatggtg
acggcgccgtccactggcttggacaccgcgcccaccaagctctacatctccaacctcgac
tccaacgtctccaacgaggacatcaaggatctgttttctgagatgggcgagatcaagcgg
tactccattaactacgacaaaagtggaagatcgaagggaactgcagaggttgtcttttcg
acaaaagcagaagcttcagctgctcttaagaagtacaacaacgtgcaccttgatggcaaa
cctatgaaaattgaggtcattgggacaaacattgaggcaccaccacctgctattttcgct
ttcgctccacctccactacctggaaatttcaattttcctcccaaaagtggacctgggagg
ggtgctggtggtcgaggatggcatcggggcggaggtgggttcactggtcatggccgaggg
cgtgatggtggccgagggcgtggtgctagccgtgggcgagggaggggagggcgtggcaat
gtggaggtttctgctgcagacctcgacgctgacttggacaagtaccactcggctgcgatg
caaactagctag

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