Lolium rigidum (rigid ryegrass): 124699178
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Entry
124699178 CDS
T09103
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124699178
09122 Translation
03013 Nucleocytoplasmic transport
124699178
03015 mRNA surveillance pathway
124699178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124699178
03041 Spliceosome [BR:
lrd03041
]
124699178
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124699178
TREX complex
124699178
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124699178
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124699178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
124699178
NCBI-ProteinID:
XP_047087477
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All DBs
Position
3:238602097..238604244
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AA seq
263 aa
AA seq
DB search
MADALDMSLDDIITKNKPSHSRGRGRRNPASASGGSAPARRRFHRRAANRSAAAPYHQLN
FQPQQVPPAFGYVAQPMAMVTAPSTGLDTAPTKLYISNLDSNVSNEDIKDLFSEMGEIKR
YSINYDKSGRSKGTAEVVFSTKAEASAALKKYNNVHLDGKPMKIEVIGTNIEAPPPAIFA
FAPPPLPGNFNFPPKSGPGRGAGGRGWHRGGGGFTGHGRGRDGGRGRGASRGRGRGGRGN
VEVSAADLDADLDKYHSAAMQTS
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccctggacatgtcgctggacgacatcatcaccaagaacaagccctcgcac
agccgcggccgcggccgccgcaacccggcctccgcctcgggaggatccgcgcccgcgcgc
cgccgcttccaccgccgcgccgccaaccgctccgccgcggcaccctaccaccagctcaac
ttccagccgcagcaggtgccgccggctttcgggtacgttgcccagccgatggccatggtg
acggcgccgtccactggcttggacaccgcgcccaccaagctctacatctccaacctcgac
tccaacgtctccaacgaggacatcaaggatctgttttctgagatgggcgagatcaagcgg
tactccattaactacgacaaaagtggaagatcgaagggaactgcagaggttgtcttttcg
acaaaagcagaagcttcagctgctcttaagaagtacaacaacgtgcaccttgatggcaaa
cctatgaaaattgaggtcattgggacaaacattgaggcaccaccacctgctattttcgct
ttcgctccacctccactacctggaaatttcaattttcctcccaaaagtggacctgggagg
ggtgctggtggtcgaggatggcatcggggcggaggtgggttcactggtcatggccgaggg
cgtgatggtggccgagggcgtggtgctagccgtgggcgagggaggggagggcgtggcaat
gtggaggtttctgctgcagacctcgacgctgacttggacaagtaccactcggctgcgatg
caaactagctag
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integrated database retrieval system