Lethenteron reissneri (Far Eastern brook lamprey): 133357606
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Entry
133357606 CDS
T09663
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
lrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133357606
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133357606
09142 Cell motility
04820 Cytoskeleton in muscle cells
133357606
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrj04147
]
133357606
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133357606
Exosome [BR:
lrj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133357606
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133357606
BRITE hierarchy
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133357606
NCBI-ProteinID:
XP_061431608
LinkDB
All DBs
Position
58:complement(186244..236528)
Genome browser
AA seq
1587 aa
AA seq
DB search
MKEVVMEEVAMCSLAAQGLPGELGKRGPPGSGGPRGPRGEPGLGGGPGQPGQPGFPGFPG
AKGIKGDTASIPPGLIGPPGDSGFPGRDGEQGPAGNSGRQGPPGTPGRDGPPGSAGRPGA
PGDPGDDVPGLRGERGDAGDVGFPGPKGFSRLVQPPPQPLTKGEKGDPGDPARGGEQGPP
GPRGQSGFSGEPGDPGFPGRPGFATGAPGATGPEGYPGRKGQPGFPGSPGNPGFSGLKGE
QGDRGLPGPEPFSVGQEGPPGDTGSPGNPGPSGAPGNRGTPGSPGPPGQIIGGPAEDGIP
GFPGTRGPKGYSGDPGAQGQGYPGVSGWDGAPGPPGAKGASAGQAGGGGGGSPGQPGVPG
RDGPPGTRGSPGSPGDCDCRSIAGSQPFPGRPGAPGPPGRPGMFGGLGPNGSRGDPGPSG
PTGLNGLPGAPGPTGPQGEKGERGDPSRVSATAKGEKGNPGLPGPSGQPGQPGSPGSRGR
DGNPGFQGPPGDAGSSVRGDIGPPGNPGRLAAPGQPGAPGMGLVGLPGVQVPGDPGIPGL
PGFPGARGPQGDTLPCPVKGEAGRSGLPGLPGPRGPPGLDGFRGTPGFLGTPGLKGDMGD
PGVPGVGGTQGFPGLRGDPGLPGSPGRPGAAGSLGQPGRPGTPGGKGPPGDVLGARAGEP
GPSGPPGPPGEKGIPGDRGRDGERGRDGPLGFPGVKGDRGVGGFPGSPGPDGRPGPSSPG
PAGLPGPPGSSGRPGQNGFPGSPGPQGDPGLSVSEGYKGLAGPPGFPGRPGPPGPPGSPS
SLGRDGNPGQPGFPGPKGDPGILGFPGSPGPMGRSGEPGLRGPQGQNGAAGQPGAPGANG
RKGEGGDLGQPGLTVAGPDLRGQTGDLGDTGFPGTPGFPGRAGDPGPNGRPGAPGRPGFP
GAPGSLLGLVGDPGLPGFAGLVGVKGRAGFPGPPGFPGFVGPPGSDGFPGRPGDPGGAGF
RGAKGEPGDARGQPGPPGFKGEAGTPGLPGAPGEAGFPGEPGPPGFPGGSGPSGFRGDAG
SPGFPGGPGSLGDVGDRGPDGFNGLPGPLGPPGPSGPPGSPGFAGSPGLTGLDGLPGGKG
PPGPPGVGVPGPLGPPGRDGSPGTPGTSFPGSPGEPGGPGLPGDTGFPGFPGVPGPPGER
GPVVGPLPGERGTPGFPGRDGEPGRPGSPGRPGALGPSGPRGKPGFSGGPGGSGGPGLDG
DAGAPGTPGSPGSSGYKGGRGDPGGLGFPGQEGFPGDPGYPGEQGDSGWPGSQGPPGALG
LPGPQVDFTGLRGAPGPIGPPGELGLAGPPGPPGPQGFPGGSGSPGRPGKQGTDGFPGRK
GAAGEPGPAGPLGPSGLPGERGSPGAAGAPGLVSDAALVREDGGFLLVKHSQSIEVPACP
QGMARLWDGFSLLYIEGNEKAASQDLGLAGSCLPRFSTMPFVYCGVDAVCSYASRNDKSF
WLSSTAAIPMMPVSGDDIRPYISRCSVCEAPTQAIAVHSQDSEIPRCPPGWRSLWIGYSF
LMHMASAEGGGQPLESPGSCLEDFRTSAFLECQGPRGTCHYFADEQSFWLTRVAAASQFA
PPRPGTIKDAFGQRSRISRCQVCLKNV
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggtggtgatggaggaggtggcgatgtgctctctggctgcgcagggtttgcca
ggggagctggggaagcggggccccccagggtctgggggcccccgggggccgcggggcgaa
cccggcctgggcggggggcctgggcaaccggggcagccggggttcccggggttccccgga
gcaaaagggatcaaaggggacacagcttcaatcccgccgggtctgatcggacccccgggt
gattctggatttcctgggcgcgatggcgagcagggcccggccgggaactccggccgccag
ggcccgcccgggacgccgggacgcgacgggcccccgggctctgcaggacgccccggtgcc
ccaggagacccgggagacgacgtccccgggctgagaggggagcgtggagatgcgggagac
gttgggtttccgggacccaaaggcttctctcggctggtgcagcctccaccacagccactc
accaagggagagaagggtgaccccggggacccggcgcgtggcggggaacagggtccacca
gggcccagagggcagtcgggcttctctggtgagccaggggatccgggatttccggggcgg
ccggggttcgctacgggcgcaccgggggccaccggcccagaggggtaccctgggaggaag
ggtcagccaggattcccggggtcaccaggaaacccaggattttcggggttaaagggtgaa
cagggagatcggggtcttccaggtcctgaaccgttcagtgtggggcaggaaggccctccc
ggagacacggggtcccctgggaaccccggcccgtccggtgcccccgggaatagggggacc
ccaggatctcccggtcctcccggccagatcatcggtggcccagctgaggatggtatccct
gggtttccaggcacgcgggggcccaaggggtactccggggaccccggggcccaggggcag
gggtaccccggcgtctccggttgggatggagcaccggggccccctggagctaaaggggcc
agcgccgggcaagccggtgggggtggcggcgggtctcccggtcaacccggggttcccgga
cgagacggccctcccggaactcgtgggagcccaggcagccccggggactgtgattgccgc
tccattgccgggtcccagcccttccccggccgccctggagcccccggccctcccggccgc
ccggggatgttcgggggcctgggccccaacgggagcagaggagacccggggccctccggc
cccacgggcctcaacggcctgcccggtgcgccaggacccacagggccccagggggagaag
ggggagcgcggggatccatccagggtctctgctacagctaaaggcgagaagggcaatcct
ggtttgccagggccgagcggacaacctggtcagcctgggtctccggggtcaagaggacga
gatgggaaccccgggttccagggccccccgggagacgccggcagcagcgtccggggggac
atcggccctcctgggaaccccgggcgcctggccgccccggggcagcccggtgccccgggg
atggggctggtcggactgccgggggttcaggtacctggcgaccctgggattccaggtctg
cccggctttcccggcgcacggggaccccaaggtgacactttgccgtgtcctgtgaaggga
gaagccggccgatcggggctgcccggattaccgggcccaagaggacccccggggctggac
ggattccgagggacccccgggttcctggggaccccgggcctcaagggggacatgggggac
cctggggtcccaggagtggggggcacacaaggcttccctgggctccgtggggacccaggg
ctgccaggctccccggggcgacccggagcagcagggtcactggggcagcccggccgaccc
gggactccgggaggcaaggggcccccaggggatgtgctgggggcccgagccggagagccg
gggccttcagggccccccgggccccccggggagaaagggattcccggggaccgtggccgg
gatggggagagaggcagggacggaccgcttggctttcccggggtcaagggcgatcgaggg
gtcggcggattccccggaagcccagggcccgacggaaggccagggccctcctcgccgggg
cccgcaggccttcccgggcccccggggtcttcaggccggcccggccagaatggcttccct
ggctccccggggccgcagggagaccccgggctctcggtgtccgagggatacaaggggctc
gccggaccccccggattccccgggcggccgggacctcctggaccccccgggtctccgtct
tctctgggccgggatgggaaccctgggcaacccggcttccccggccccaaaggagacccc
gggatcctaggcttcccaggctcacctgggccgatgggacgctcaggggagcccggcctg
cgcggcccacagggtcagaacggagccgcgggccagcccggggccccaggggccaacggc
aggaaaggtgagggaggagacctggggcagcccggcctcactgtggccggccctgacctc
cgcgggcagacaggggacctgggagacacggggtttcctgggaccccggggttccccggt
cgcgcaggagacccgggccccaacgggagaccaggggccccgggtcgtcccggtttcccc
ggcgctcccggctccttgctgggcctcgtcggagaccctgggctccccggatttgccgga
ttggtgggagtcaagggccgcgctggttttcctggaccccccggattcccaggatttgtg
ggacccccgggaagtgacggcttcccagggcgcccaggagaccccggcggtgctggattc
cgcggcgctaaaggagaaccgggagatgcccggggtcagccgggccccccaggcttcaag
ggcgaggcagggacaccagggttgcctggggccccgggcgaggctgggtttcccggggag
cctgggccccctggtttcccgggtggatctggaccaagtggtttccgtggcgacgccgga
tcccccggttttccaggaggtccgggttccctgggtgacgttggggatcgaggccccgat
gggtttaacggcctccctgggccccttggcccccccggtccgagtgggccccccggctcc
ccagggtttgctgggagccccgggctcaccggactggacgggctaccaggaggcaaaggc
ccccccggccctcccggtgtgggggtgccgggtcccttggggcccccaggacgggatggc
tcacctgggacccccggaacgtcttttccagggtcgccgggggaacctggggggcctggg
ttgccaggagatactggattccctgggtttcctggagtgccgggaccccctggggagagg
ggccctgtggtgggaccccttcccggggagcgcgggaccccggggttcccggggagggat
ggggagccagggcggcctgggtcccctggccgcccgggtgctttgggaccctcagggccc
agggggaagcccggcttctctgggggccccggaggaagtgggggcccggggcttgatgga
gatgccggagctcctgggacacccggcagccctggctcctccggatacaaaggcggccgt
ggagatcctggcggactgggattccccgggcaggaaggcttccccggcgaccctgggtat
cctggagagcagggagactcgggatggccaggctcacagggcccacccggggcccttggc
ctgccgggcccacaggtggacttcaccggcctgaggggagcgccggggcccatcggccct
cctggggagctgggactggccgggccgcccggtcccccgggcccccagggattcccagga
ggcagtgggtctccggggcgtccagggaaacagggaaccgacgggttccctggcaggaag
ggggcagcaggggagccgggcccagcagggcccctggggccctcgggactcccaggcgag
cggggctccccaggggcggcgggcgcgccgggcctggtgagcgatgctgcgctggtgcgc
gaggacgggggattcctgctcgtcaagcacagccaatcgatcgaggtgcctgcatgcccc
cagggcatggcgcgcctgtgggatggcttcagcctcctctacatcgagggcaatgagaag
gccgcctcgcaggacctgggcctggcgggatcgtgcctgccgcgcttcagcacgatgccc
ttcgtctactgcggcgtggacgccgtgtgcagctacgcgtcgcgcaacgacaagtccttc
tggctctccagcaccgccgccattcccatgatgcccgtgtccggagacgacatccgcccc
tacattagtcggtgctcggtgtgcgaggcgccgacacaagcgatcgctgtgcacagccaa
gacagtgaaattccacggtgcccgccagggtggcgaagcctctggatcggctactccttt
ctcatgcacatggcgtcggcggaaggtggcgggcagccgctggagtctccgggctcgtgc
cttgaggacttccgcacgtcggccttcctcgagtgccagggcccgcgtggcacctgccac
tactttgcggacgagcaaagcttctggctgacgcgcgtagcggccgcctcccagttcgcg
ccgccgcggcccggcaccatcaaggacgcgttcgggcagcggtcacgcatcagccgctgc
caggtctgcttgaagaacgtgtga
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