Labeo rohita (rohu): 127156243
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Entry
127156243 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: mucin-5B-like
Organism
lroh
Labeo rohita (rohu)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWD
C8
TIL
Dynein_AAA_lid
VWC
Motif
Other DBs
NCBI-GeneID:
127156243
NCBI-ProteinID:
XP_050954947
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All DBs
Position
25:21757903..21884067
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AA seq
3197 aa
AA seq
DB search
MDAVSMGTMKMSQTWMLRWVIVLMGLRSVQADFLEDYADTMKDPMDFTTWPSTTTLFPMT
TLMATKGEPNPDHRSTICSTWGNFHFKTFDGQFFQVPDTCNYVLAVMCDSTASDFNIQMQ
REVVNKTITFDAVTIKMEGVLIKITNGIITMDNKVVSIPINKNGIKIEGSPSSIKVSRYG
VTVFWEEDNSVVIELAKKYQGQTCGLCGNYNGNKDDDIPQAGLATWKVSTPTESCEEVTL
PPRNKCNQNVSVCKQYLSSPGFADCAKVMDMSSFEKTCVDDLCQCFGNHDCLCNTLTEIS
RQCTHAGGKPGTWRTEKLCSKTCPMNMEYMECGGPCKSTCSDPGANLMCSGHCVDGCFCP
NGTVEDDIAKTGCIPVNKCPCVHNGKLYNPGQSFKQACKNCECAAGHWTCTSLECPGICS
IVGGSHVTTYDGKTFTFSGNCDYVFTKHSDDSDIAVVGSLGKCDQARADTCLHSVTLVIS
GTTFSFSSNGVVTLNGSSHYKLPGITGPVSIFQPSSSFIIADITSLRLEIQLAPVMQLYI
VASTKEKGKMSGLCGNYNDVQADDFKTDSGITEGTPITFINFWKKNSYSCPDLENTYDNP
CSLSVDTEKLAKDWCSRLTNKSGVFSACHLEISPETYYKXWCVYDTCKCADIRKCMCAAV
SNYAHACAARGIILQGWMDSEPCGSECSENMKYSYGMTSCGGTCRSLSEQRDTCPGSFTP
VDGCICAAGTYLNEEGSCVPAHQCPCYKDDRVIEALGTSYIGGDACTCNLGKLHCSSQQD
CMAPKVFFKCSNYELGMKGIECQRTCQNQDLNNCVSTGCISGCMCPNDLLDNGKGGCVER
KNCPCVHNGLTYSPGDQVQEDCNTCTCTNGRWTCTDYECYGTCTIYGEGHFKTFDGKQYS
FLGDCEHILTHDYCNNEQSPYYLRLVTENIPCGTSNTICSKSINLFFGRYKMILSEENGI
KVVESNGTDYQYRIHTAGIYNVIEIKGLLNLLWDNKTSLMIQLHSKFKGKVCGLCGNFDG
NANNDFVKQDGQEVTDAVVFVNSWKVNPICPEVSNVINPCQKNPHRSAWAIKQCNIIKSP
VFKDCHSHVDSGPYYDACVKDTCACDSGGDCDCFCTAVAAYAAECRKKGACVAWRSPTIC
PLFCDYYNSAPDECEWHYKTCGSPCMKTCRNPSGTCSNQIPLLEGCFPQCPSDRPLLRED
TGKCVPQSECLSLCTYDGKTYTVGQVVYDTTDGNGTCFTAVCDYNSIIRRNISKCIKTTT
PFTFTPPPQTTRTTVIVTVTKATTVVWETPTPPEVSTTAVTGPTPPTQTPPTETPSTATT
TVVQPTPTPPEVSTTAVTGPTPPTQTPPTETPPTATATPGTPPTRRTETPSTATTTVVQP
TPTSPEVSTTAVTGPTPPTQTPPTETPPTATATAGTPPTRRTETPSTATTTVVQPTPTSP
EVSTTAVTGPTPPTQTPPTETPPTATQLQKHHQQDNTTSQQKHHNSTATPPTTCQPTPTS
PEVSTTAVTGPTPPTQTPPTETPSTATATSETPLTRRTETPSTATTTVVQPTPTSPEVST
TAVTGPTPPTQTPPTETPSTATATETPLTRRTETPSTATTTVVQPTPTPPEVSTTAVTGP
TPPTQTPPTETPPTATATPETPPTQDEHHQQKHHQQQLQLLFSQHLHHQKFLLLLLLVQH
HLHKHLPQKHHQQLPQLLKHHQQDNTSTTTSPEVSNCCSANTYITRSFYYCCYWSNTTYT
NTSHRNTINSYCNCWNTTNKKHTINSNYNCCSANTYITRSFYYCCYWSNTTYTNTSHRNT
TNSYLWNTTNKRTHHQQQLQLLFSQHLHHQKFLLLLLLTNGNTINSNYNCCSANTYTTRS
FYYCCYWSNTTYTNTSHRNTINSYCNCWNTTNKTNTNTINSNYNCCSANTYITRSFYYCC
YWSNTTYTNNTSHRNTINSNYNCCSANTYTTRSFYYYCYWSNTTYTNTYITRSFYYCCYW
SNTTYTNTSHRNNSTATATSGNTINSNYNCCSANTYTTRSFYYCCYWSNTTYTNTSHRNT
INSYCNFWNTTNKTNRNTINSNYNCCSANTYITRSFYYCCYWSNTTYTNTSHRNTINSYC
NFWNTTNKTNTNTINSNYNCCSKHHQQQTVVQPTPTSPEVSTTTVTGPTPPTQTPPTETP
STATETPSTVVQPTPTSPEVSTTAVTGPTPPTQTPPTETPSTATATSGTPLTRRTETPST
ATTTVVQPTPTSPEVSTTAVTGPTPPTQTIPPTETPSTATTTVVQPTPTSPEVSTTAVTG
PTPPTQTPPTETPSTATATAETPLTRRTETPSTATTTVVQPTPTSPEVSTTAVTGPTPPT
QTIPPTETPSTATTTVVQPTPTSPEVSTTAVTGPTPPTQTPPTETPSTATATAETPTRRT
ETPSTATTTAVLTATPTVTETPSTRITVYTESTTEITHSTSPQIIITTRCHCTFANQTFP
PESIIYNKTDKAGWCYFAYCNSNCVSEITQKPCPQTTTVPVSTVPQDCIYVNRKNGETWN
ERCTTKTCINGNVTTSPVQCNSEYSVIPTCVNGLDPELVYYNNGCCTKYECPCRCSGWGD
PHYSTFDGKYYTFQGNCDYVLVREIIPRYNISVHVKNYYCDVTNNFACPEYVIVKYKSYE
IKLTSNSKELQVYVNNVVKVPTFLNEDFSITSSGLSVILKIGEIKAQILVSHQGFEINLP
FSYFHGNTEGQCGVCDNDARNDCRRPDGTIDQSCEKMAALWADSPKCETPPAQPSKPLPT
CTAQICEVIKSKLFKSCHDVVPYKSYYEACKYDVCYKKNDSMACASLEAYAQQCGQQSVC
VDWRNSTDLKGLCTYKCAADYKVYKACGPKVEKTCSARYNEMFVENSSETERETFMEGCY
CPENTYLVSSTTNQCTRTCDCIGPDGLPRQPGDTWTVNCTKYRCSTESFGVVQEPMNCPT
IKPCDHGYKSVMKDCCPTCECDTSLCSRKCDVGYKLAEKIPDDGCCAPCVPEDVCVYNNT
EYKPGVKIPSEPCVECYCQMNKDPKTKLHEVTCANKVCTPCAEGFERVKQVGECCGTCKQ
KTCIYTAPDNTTHTVQVGEVVNYKCENITCRDINGXFVTEKNTPKCPYFNPDDCEPGTEK
SDAEGCCKTCEPKTCTVLKNTTHVEANDCKSVHPIEVTSCSGRCFTQSIPTSRTTHPSIH
IWDILTVHIEAKTILKS
NT seq
9594 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgtctccatggggactatgaagatgtcccagacgtggatgttaagatgggtc
atcgtgctgatggggctgcggtcggtacaagcggatttcttggaggattatgcggatact
atgaaagatcctatggactttacgacctggccctcaacaacaacattgttccctatgacg
accctgatggcaacaaaaggtgaaccgaatcctgatcatcggtccacgatctgcagcaca
tggggcaatttccacttcaaaacctttgatggtcaattctttcaagtgccagatacctgc
aactatgttctggccgtgatgtgtgacagcacagcatccgattttaacatccaaatgcaa
agagaggttgtaaacaaaacaatcacttttgacgcagtcacaatcaaaatggagggagta
ctcatcaaaatcactaacggcatcatcaccatggataataaagtggtgtcgattccaatc
aataagaatggaattaaaattgaaggaagcccatcaagtattaaggtctccagatatgga
gtgactgtcttctgggaggaagacaactctgtagtgattgaacttgcaaagaagtaccaa
ggtcagacctgtggactctgtggaaactacaacggcaacaaggatgacgatattcctcaa
gcgggtctggcgacatggaaagtctccacaccaactgaatcctgcgaggaggttacactt
cctcccagaaataagtgcaatcagaatgtcagtgtttgcaagcagtatctcagcagtcca
ggctttgctgattgtgccaaagtgatggacatgagttcatttgaaaaaacctgtgtagac
gacctctgtcagtgtttcggcaaccacgactgtctctgcaacacgctcacagagatttca
cgacagtgcacacatgctggaggaaaaccaggaacatggaggacagaaaagctctgttca
aagacatgtcctatgaacatggagtacatggagtgtggtggtccatgcaagagcacctgc
tcagatccaggcgcaaatctaatgtgcagcggacactgtgtggacggctgtttctgtcct
aatggcaccgtggaagatgacattgctaagactggctgtattcctgtaaacaagtgccct
tgtgtgcacaacggcaaattatataatccaggacagtctttcaaacaagcttgcaaaaat
tgtgagtgtgcagctggacactggacttgtacatccctggaatgtcccggaatctgctct
attgttggagggtctcacgtcaccacttatgatggaaagaccttcacctttagcggcaac
tgtgactacgtcttcactaagcactctgatgacagtgatattgctgttgtgggaagcctg
ggcaagtgtgatcaggcccgagcagacacctgtctacattcagttacccttgttatttcg
gggactacttttagcttttcctccaatggtgttgtcacactgaatggaagcagtcactat
aagcttcctggcatcacaggtcctgtgagcatcttccagccctcttcctccttcatcatt
gctgatataacaagtcttcgtctagagatccagttggctccagtcatgcagttgtatatt
gtagccagcactaaagaaaaaggcaaaatgagtggtctatgtggaaactataatgatgtc
caagcagatgacttcaaaacagactcgggcatcacagaggggacaccaataacttttatc
aacttttggaagaaaaactcatatagttgtccagatcttgaaaacacatatgacaacccc
tgtagcttgagcgtggacacagagaaacttgctaaagactggtgttcccgtcttacaaac
aagagcggagtcttttccgcatgtcatttagaaatatctcctgagacttattacaagtaa
tggtgtgtctatgacacctgcaaatgtgcagatattagaaagtgtatgtgtgcagccgtg
tccaactatgcccacgcctgtgctgccagaggaatcattctccagggctggatggattca
gagccctgtggatctgagtgctcagaaaacatgaagtactcctatggtatgaccagctgt
ggtggcacctgccgctctctcagtgaacaacgtgacacctgcccagggtccttcacacct
gtagatggctgcatctgtgctgcgggaacctaccttaatgaagaaggcagttgtgtgcct
gctcaccagtgtccttgttacaaagatgaccgagtcatagaggcactgggaacatcctac
ataggtggtgatgcatgcacctgtaatcttggcaaattgcactgctccagtcaacaagac
tgcatggctccaaaggtcttctttaaatgctcaaattatgaacttggaatgaaagggata
gagtgtcagaggacctgtcagaaccaagacctaaataattgtgtgagtacagggtgtata
tcagggtgtatgtgtccgaatgaccttctggacaatgggaaaggtgggtgtgtggagagg
aaaaactgcccctgtgtccacaatggactcacctattcacctggtgatcaagttcaagag
gactgtaacacctgcacatgcacaaatggaaggtggacttgtacagattatgagtgttac
ggcacctgtaccatctatggtgaaggtcatttcaagacttttgatggcaaacaatattct
ttccttggagactgtgaacacatcttaacccatgattactgtaataatgagcagagtcca
tattatctacgcctggtcacagagaacatcccctgtggcaccagcaacaccatttgctcc
aagtccatcaatcttttctttgggagatacaagatgattttatccgaggagaatgggatc
aaagttgttgaaagcaatggcactgattaccaataccgaatccatactgctggaatatac
aatgtcatagagatcaaaggtcttttgaatttactctgggacaataaaacaagtctgatg
atccaacttcattccaaatttaagggcaaggtgtgtggactgtgtggaaactttgatggt
aatgcgaacaatgactttgtgaagcaagatggacaagaggtcactgatgcagtggtattt
gtgaacagttggaaggtgaatcccatctgtccagaagtgagcaacgtcataaatccatgt
caaaaaaatccccatcggagtgcctgggctataaaacaatgcaacatcatcaaaagccct
gtctttaaagactgccattcacatgtggattctggcccatactatgatgcctgtgtaaag
gacacctgtgcatgtgacagtgggggtgactgtgattgtttctgtactgcagtggcagct
tacgctgccgaatgccgtaaaaaaggagcttgtgtggcatggcggagccccaccatttgc
cctttattctgtgactactacaacagcgctccagatgaatgtgaatggcactataaaacc
tgtggatccccctgcatgaagacgtgcagaaacccatcaggaacctgctctaatcaaatt
cctctgttagagggatgttttcctcagtgcccttcagacaggccacttctcagggaggac
acaggaaaatgtgttccacagtcagaatgtctctcgctgtgtacctatgatgggaagaca
tacactgttggacaagtggtgtacgataccacagatgggaatggcacatgttttactgct
gtgtgtgattacaatagcataattagaagaaatatttctaaatgcataaaaacaactaca
ccattcactttcacacctccaccacaaactactagaactacagttatagtaacagttaca
aaggctacaactgttgtttgggaaacacctacaccaccagaagtttctactactgctgtt
actggtccaacaccacctacacaaacacctcccacagaaacaccatcaacagcaactaca
actgttgttcagccaacacctacaccaccagaagtttctactactgctgttactggtcca
acaccacctacacaaacacctcccacagaaacaccaccaacagctactgcaactcctgga
acaccaccaacaagacgaacagaaacaccatcaacagcaactacaactgttgttcagcca
acacctacatcaccagaagtttctactactgctgttactggtccaacaccacctacacaa
acacctcccacagaaacaccaccaacagctactgcaactgctggaacaccaccaacaaga
cgaacggaaacaccatcaacagcaactacaactgttgttcagccaacacctacatcacca
gaagtttctactactgctgttactggtccaacaccacctacacaaacacctcccacagaa
acaccaccaacagctacccaactgcagaaacaccaccaacaagacaacaccacctcacaa
cagaaacaccacaacagcactgcaacaccacctacaacttgtcagccaacacctacatca
ccagaagtttctactactgctgttactggtccaacaccacctacacaaacacctcccaca
gaaacaccatcaacagctactgcaacttctgaaacaccactaacaagacgaacagaaaca
ccatcaacagcaactacaactgttgttcagccaacacctacatcaccagaagtttctact
actgctgttactggtccaacaccacctacacaaacacctcccacagaaacaccatcaaca
gctaccgcaactgaaacaccactaacaagacgaacggaaacaccatcaacagcaactaca
actgttgttcagccaacacctacaccaccagaagtttctactactgctgttactggtcca
acaccacctacacaaacacctcccacagaaacaccaccaacagctaccgcaactcctgaa
acaccacctacacaagacgaacaccatcaacagaaacaccatcaacagcaactacaactg
ttgttcagccaacacctacaccaccagaagtttctactactgctgttactggtccaacac
cacctacacaaacacctcccacagaaacaccaccaacagctaccgcaactgctgaaacac
caccaacaagacaacacatcaacaactacatcaccagaagtttctaactgttgttcagcc
aacacctacatcaccagaagtttctactactgctgttactggtccaacaccacctacaca
aacacctcccacagaaacaccatcaacagctactgcaactgctggaacaccaccaacaag
aaacacaccatcaacagcaactacaactgttgttcagccaacacctacatcaccagaagt
ttctactactgctgttactggtccaacaccacctacacaaacacctcccacagaaacacc
accaacagctacctctggaacaccaccaacaagagaacacaccatcaacagcaactacaa
ctgttgttcagccaacacctacaccaccagaagtttctactactgctgttactgacgaac
ggaaacaccatcaacagcaactacaactgttgttcagccaacacctacaccaccagaagt
ttctactactgctgttactggtccaacaccacctacacaaacacctcccacagaaacacc
atcaacagctactgcaactgctggaacaccactaacaagacgaacacaaacaccatcaac
agcaactacaactgttgttcagccaacacctacatcaccagaagtttctactactgctgt
tactggtccaacaccacctacacaaacaatacctcccacagaaacaccatcaacagcaac
tacaactgttgttcagccaacacctacaccaccagaagtttctactactactgttactgg
tccaacaccacctacacaaacacctacatcaccagaagtttctactactgctgttactgg
tccaacaccacctacacaaacacctcccacagaaacaactcaacagctactgcaacttct
ggaaacaccatcaacagcaactacaactgttgttcagccaacacctacaccaccagaagt
ttctactactgctgttactggtccaacaccacctacacaaacacctcccacagaaacacc
atcaacagctactgcaacttctggaacaccactaacaagacgaacagaaacaccatcaac
agcaactacaactgttgttcagccaacacctacatcaccagaagtttctactactgctgt
tactggtccaacaccacctacacaaacacctcccacagaaacaccatcaacagctactgc
aacttctggaacaccactaacaagacgaacacaaacaccatcaacagcaactacaactgt
tgttcaaaacaccatcaacagcaaactgttgttcagccaacacctacatcaccagaagtt
tctactactactgttactggtccaacaccacctacacaaacacctcccacagaaacacca
tcaacagcaacagaaacaccatcaactgttgttcagccaacacctacatcaccagaagtt
tctactactgctgttactggtccaacaccacctacacaaacacctcccacagaaacacca
tcaacagctactgcaacttctggaacaccactaacaagacgaacagaaacaccatcaaca
gcaactacaactgttgttcagccaacacctacatcaccagaagtttctactactgctgtt
actggtccaacaccacctacacaaacaatacctcccacagaaacaccatcaacagcaact
acaactgttgttcagccaacacctacatcaccagaagtttctactactgctgttactggt
ccaacaccacctacacaaacacctcccacagaaacaccatcaacagctactgcaactgct
gaaacaccactaacaagacgaacggaaacaccatcaacagcaactacaactgttgttcag
ccaacacctacatcaccagaagtttctactactgctgttactggtccaacaccacctaca
caaacaatacctcccacagaaacaccatcaacagcaactacaactgttgttcagccaaca
cctacatcaccagaagtttctactactgctgttactggtccaacaccacctacacaaaca
cctcccacagaaacaccatcaacagctaccgcaactgctgaaacaccaacaagacgaacg
gaaacaccatcaacagcaactacaactgcagttttgacagcaacacctacagtgacagaa
acaccatcaacaagaattactgtgtatacagaatcaacaactgaaattacacattctaca
tctcctcaaatcatcattacaacgaggtgtcactgcacatttgcaaatcaaacattccca
cctgagtctatcatctacaacaaaactgataaagcaggctggtgctactttgcatactgc
aattccaattgtgttagtgaaataacacagaaaccatgtcctcagactactacggttcca
gtttcaactgttccacaggactgtatctatgtcaacagaaagaatggagagacgtggaat
gagagatgtaccactaaaacctgcataaatggaaatgttaccacaagccctgtacagtgc
aattcagagtattctgtcatacctacatgtgtcaacggacttgatcctgagttggtttac
tataacaatggctgctgtactaaatatgagtgtccatgtcgatgcagtggctggggtgat
cctcattacagtacttttgatggaaaatattatacattccaaggaaattgcgactacgtg
ttggtccgagaaatcattccaagatataatatcagtgtccatgttaaaaactattattgc
gatgttacaaataattttgcctgtccggagtatgtgattgtgaagtacaaatcctatgaa
atcaagctaacaagtaacagtaaagagctacaggtctatgtcaataatgttgtgaaggtc
ccaactttcttaaatgaagatttcagcatcacttcttctggcctatcagtgattctgaaa
atcggtgaaatcaaagctcagattttagttagtcatcaaggctttgagatcaatctcccg
ttctcctacttccatggtaacacagagggacagtgtggtgtttgtgacaatgatgccaga
aatgactgcagacgtcctgatggaacaattgaccagtcatgtgagaaaatggcagcactc
tgggctgactccccaaaatgtgaaacccctccagcacaaccaagcaaacctcttcctacc
tgcacagcacaaatttgtgaggtcattaagagcaagttgttcaagagctgtcatgacgtt
gttccctacaaaagctactatgaggcatgtaaatatgatgtgtgctacaagaaaaatgat
tccatggcctgtgccagtttggaagcctatgctcagcaatgcggccagcagtctgtatgt
gtggactggagaaactcaactgacctcaaggggctatgcacatacaaatgtgctgctgat
tacaaagtctacaaggcatgtgggcctaaagttgaaaaaacctgcagtgcaagatacaat
gagatgtttgtggaaaactcaagcgaaactgagcgtgaaacattcatggaaggttgctac
tgtcctgaaaacacatatctagttagttcaacaacaaatcaatgcacacgtacttgcgat
tgcattggccctgatggattaccaagacagcctggagatacatggactgtaaactgtaca
aaatacagatgctccactgagagctttggtgttgtccaagagcctatgaactgtccaacc
ataaagccctgtgaccacggatacaaaagcgtcatgaaagactgctgtccaacctgtgag
tgtgacaccagcctgtgctctaggaaatgtgatgtagggtataaattagcagaaaagata
cctgacgacggttgctgtgcaccctgtgtacccgaagacgtatgtgtgtacaataacact
gagtacaagcctggagttaaaatcccttcagagccttgtgtggaatgttactgccaaatg
aataaagacccaaagactaaactgcatgaagtgacatgtgctaataaagtctgtacacct
tgtgctgagggctttgagcgtgtaaaacaagtaggagagtgctgtggaacatgcaagcaa
aagacctgcatttatactgcgccggacaacaccacacatacggtccaggttggagaagtg
gtaaattacaaatgtgaaaatattacctgcagagacattaatgggntgtttgtgacagag
aaaaacacaccaaaatgcccttacttcaatccagatgattgtgagcctggaactgagaaa
tctgatgcagagggatgttgcaagacctgtgagcccaaaacctgcactgttctgaagaac
accacccatgtggaggcaaatgattgcaagtctgtccaccccatagaagtgacatcctgt
agtggccgctgtttcacccaatcaatccccaccagtaggacgacccatcccagcatccac
atctgggacatcctcacagtccatattgaggcaaaaaccatcctcaagagctaa
DBGET
integrated database retrieval system
