Labeo rohita (rohu): 127166251
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Entry
127166251 CDS
T09007
Symbol
col28a2b
Name
(RefSeq) collagen alpha-1(XXVIII) chain isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lroh01002
]
127166251 (col28a2b)
Peptidases and inhibitors [BR:
lroh01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
127166251 (col28a2b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
SOG2
Motif
Other DBs
NCBI-GeneID:
127166251
NCBI-ProteinID:
XP_050967321
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All DBs
Position
6:3324465..3358086
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AA seq
1203 aa
AA seq
DB search
MMIRLCVSWLLLLLGAQLVLAQLDDRDNRKGRNKNKQITSNVIPKNNDEDCHLDLAFLVD
SSESAKDSHVQEKRFVTDLINWIQNVRLQTGQVLSFRAAVFQYSSHVIIEQSFKDWKGVP
TFQDHIGPMPYIGHGTYTTYAITNLTRIYLEESDRGTVKVAILLYDGKSHPKNPDIVSAL
ADAKNQGIKFFTVGFTSAANMEQLRLLASPSTARYVHNLQDKGVLDKIGKEITEVANEVC
PLSPNCTCEKGERGPSGPAGKKGRPGEDGSPGPKGQKGESGFSGPPGRDGTEGKPGYKGE
KGERGECGTPGVKGDRGPEGPVGVRGSRGLQGVPGPNGDIGPEGLPGKKGERGFPGPPGI
QGETGIGLPGPKGDMGFQGRVGPPGPPGLGEPGVPGPQGPQGVPGEKGPPGEGLPGSKGE
RGLEGLKGPRGPAGPGIKGDKGDFGPPGLPGPVGFPGVGIQGEKGVEGSRGPPGSRGPPG
EGYAGPKGDQGLPGEIGAPGQRGAGEPGAKGEPGSPGLSGLPGLPGEDGAPGQKGEPGAP
GLRGTDGAPGVGIQGEKGDQGQRGIRGLAGPPGIAGPSGSKGEPGTPGRLGLPGLPGRAI
TGPKGEVGPPGPFGPVGETGYGLPGPKGDRGDPGPPGLSGPKGDGYPGPSGLPGLPGPPG
EPGPEGIGIPGPKGDIGFRGLPGPSGPPGEGVQGLPGNMGRPGPPGPTGPPGQGLQGPKG
DQGSQGVSGPRGSPGEGMPGSKGDRGAQGERGVKGVKGDMGDPGIPGQAGRPGIKGESGL
TREDIIRMIREICGCGVRCEDTPMELVFVIDSSESVGPENFKIIKDFVIALVDRLTVGLD
ATRVGLVLYSLEAQLEFSLARYMTKEDVKQAISRVHYIGEGTYTGSAIRKATQEAFYSTR
TGVKKVAIVITDGQTDKREPVKLEIAVREAHAANIEMYALGISDPTHKEFLQELNLIASD
PDSEHMFRIDDFNTLPALESKLVNHLCKDETGSLIFNRIIGFKNEYGNNGNHISGNSGYS
YGTNVNEGHRENTGTHSRTNTVLHESGREDTFAPTAGPDVNEGVERETEPETPDTNTSEQ
SSSRGNTPTVTGTSTHHRPSSGTASSSSSTTSSSTSTTVNPSTSVQYIPAPRPPLPKEVV
SVDPRCELLLDQGPCRDYNIRWYYDRQANACAQFWYGGCDGNRNRFDTEEECKKTCVVVR
AGG
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgatgatacggctgtgtgtaagctggctgcttttgctgttaggagcgcagcttgttttg
gctcagctggatgatcgtgacaatagaaaaggaagaaacaaaaataaacaaatcacctct
aacgtcatcccaaaaaacaatgatgaggactgtcatttagacctggcatttttggtggac
agttcagaaagcgccaaagacagccatgtccaagagaagcgtttcgttactgatctcatt
aactggatccagaacgtccgcctccaaacaggacaggttttgagcttcagagctgctgtt
tttcagtacagcagtcatgtgatcattgaacagtcttttaaagattggaagggcgtgccc
accttccaggaccacatcgggcccatgccgtacatagggcacggtacctacaccacctat
gccatcaccaacctcacacgcatctatctggaggagtccgaccgtggcactgtgaaggtg
gccattttgctgtacgatggcaagtcacatcccaagaatcctgatatcgtctctgcttta
gctgatgccaagaaccaagggattaaattcttcacagtgggtttcacatccgctgccaat
atggaacagctgcgcctactggccagtccttcgaccgcccgctacgtacacaacctacag
gacaagggagtcttggacaagatcggcaaagagattactgaggtggctaatgaagtgtgt
ccactttccccaaattgcacttgtgagaaaggagagcgaggacccagtggacccgctggt
aaaaagggtcgtccgggtgaagatggaagtccgggacctaaaggacaaaagggagagagt
ggattcagtggtcctcctggacgagacgggacagaggggaaacctggatacaaaggagaa
aagggtgagagaggagaatgtgggacaccaggagtcaaaggagacagaggtccggagggt
cctgttggtgtcagaggaagccgaggactgcagggtgtcccaggacctaatggagacatt
ggacctgaaggcctaccgggcaagaaaggtgagagaggctttcccggaccgccaggaata
cagggcgagactggcattgggcttcctggaccaaagggtgatatggggtttcagggcaga
gtgggtcctcccgggcctcctgggctgggtgagccaggcgtaccggggccacaggggccg
cagggtgtaccaggagagaagggccctccgggagagggtttaccaggatcaaagggagag
aggggtctggaggggctgaaaggacctagaggaccagcaggtcctggcattaaaggagac
aagggtgattttggtcctcctggtcttccaggaccagtggggtttcctggagtagggatc
caaggagagaagggtgtggaagggtcacgtggacccccgggaagcagaggcccaccgggt
gagggctacgctggaccaaagggcgatcaaggtttaccaggtgagatcggtgcaccagga
cagagaggagcaggagaaccaggagctaaaggggaacctggttctccggggttatcagga
ttaccaggtttaccaggagaggatggggctccaggacagaagggagaaccaggagctcct
gggttgaggggcactgatggagcaccaggagtgggcatccagggtgaaaaaggtgatcag
ggtcagcggggaatccgtgggttagcagggccaccaggaatagctgggccctcagggtca
aagggagagcctggcacccctgggagactgggattgcctggattaccaggacgtgctata
acaggaccaaaaggtgaagtaggcccgccgggtccatttggtccagtaggagagacggga
tatggacttcctggaccaaagggtgatcgtggtgacccaggtcctcctggtcttagtgga
ccaaaaggggacggttatcctggtccctcaggtcttcctggtcttcctggtcctccagga
gaacctggtccagagggcataggaatacctggaccaaagggtgatattggcttcagaggt
ttaccaggcccatctggacctccaggggaaggagtacaaggactacctggcaacatggga
agaccaggacctcctggaccgactgggccaccaggacaaggcctacagggtccaaagggt
gatcagggctcacagggtgtgagcgggccaagaggatctcctggagagggaatgcctggg
tcaaagggggatcgtggagctcagggtgagaggggggtgaaaggggttaaaggtgatatg
ggagatcctggcattcctggacaagcagggagaccaggaatcaaaggtgaatctggacta
acgagggaagacataatcagaatgatcagggagatttgtggctgtggagtcaggtgtgaa
gacactcctatggagctggtgtttgtgatcgacagctctgaaagcgtcgggcctgaaaac
tttaagatcatcaaggactttgtgatcgcattagtcgacagactcaccgttgggctggat
gccacccgagtcggtctcgttttgtacagcctagaggcccagcttgagttcagcctcgct
cgctacatgaccaaagaagacgtcaaacaagcgataagcagggttcattacatcggcgag
ggcacgtacaccggctctgccatccgcaaagcaactcaggaagcattttacagcacaagg
actggggtgaaaaaggttgccattgtcatcacagatgggcaaacggataaacgggagcct
gtgaagctggaaatcgctgtcagggaggcacatgcagccaacattgagatgtacgctctg
gggattagtgatccgacacataaagagtttctgcaggagctcaatctcattgcgtcggac
cctgacagtgagcacatgttccgcatagacgacttcaacaccttgccagctctggagtcc
aaactggtcaatcacctctgtaaggatgagaccggatcacttatcttcaatcgcattatt
ggctttaaaaatgaatatggtaataatggcaaccacatcagtggtaacagcgggtatagt
tatggcaccaacgtaaatgaaggccacagagagaacacaggaacacactctaggacgaac
actgtccttcatgagagcgggagagaagacacgtttgctccaacagctggtccagacgtt
aatgagggggttgagcgtgagactgagcctgagacaccagacacaaacacttcagagcag
agcagcagtagaggaaatactccaacagtcactgggacatccacacatcatagaccttca
tcagggacagcatcttcatcatcatcaacaacatcatcttcaacatcaacaactgtgaac
ccgtcaacctcggtgcagtatataccagcaccacgaccaccattacctaaagaggttgta
tctgtggacccgcgttgtgagctgctcctggatcagggcccgtgtcgggactataacatc
cgctggtactatgaccggcaggccaacgcctgcgctcagttctggtacggaggctgtgat
gggaaccgtaatcgctttgacacagaagaagagtgcaaaaagacatgtgttgtcgtgaga
gcaggaggctga
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