Labeo rohita (rohu): 127175780
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Entry
127175780 CDS
T09007
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127175780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127175780
Spliceosome [BR:
lroh03041
]
Complex B
Other components
Prp19-related factors
127175780
Complex C
127175780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
zf-CCCH
zf-CCCH_4
RRM_3
Motif
Other DBs
NCBI-GeneID:
127175780
NCBI-ProteinID:
XP_050982995
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Position
14:complement(24391076..24400920)
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AA seq
422 aa
AA seq
DB search
MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGMSVKDDMPRSDVNKEYYTQN
MEREIQNSDGTRPVGMLGKAQNPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASSMPRLDPPEDKSITTLYIGGLG
ENVTDSELRNNFYQYGEIRTITLVQRQQCAFIQFATRQGAELAAEKTFNKLIINGRRLAV
KWGRSQAAKGKDGKDGFDEMGTGLEPVPGLPTTLPPPPALEQEAPANYFNLDPSSSPAVM
NISLPPPPGLPNPPPPGFGPPMFHPMGPPPPPPMALRPPGHIHYPSQDPQRMGAHAAVRH
SD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccctgggctcaaacacctacaacagacagaactgggaagattcggacttc
cctattctctgtcaaacatgtcttggggaaaatccatacattcgcatgaccaaagaaaag
tatggcaaggaatgcaagatatgtgcgcgtccctttactgttttccgctggtgtcctggt
gtacggatgcgctttaagaagaccgaggtgtgtcagacctgcagtaagatgaagaacgtc
tgtcagacgtgtttgttggacctggagtacggtcttccaatccaggtcagagacacggga
atgtccgttaaagacgacatgccgaggtctgacgtgaacaaggaatattacactcagaac
atggagagagagatccagaactcagatggtacgagaccggtggggatgctgggtaaagca
cagaaccccagtgacatgctgctgaagctggcgcgaacaacgccgtactacaaacgtaac
agacctcacatctgctccttctgggtgaaaggagaatgtaagagaggagaggagtgtccc
tacaggcatgagaagcccacagaccctgatgatcctctggccgatcagaacattaaagat
cgttattatggcattaacgacccggtggcggataaacttctgaagagagcatccagcatg
cctcgactggacccgcctgaggacaagtccatcacaacattatacattgggggactggga
gaaaacgtcactgactctgagctcaggaataatttctaccagtacggtgagatccgtacg
atcacgttggttcagaggcagcagtgcgcgttcattcagtttgccacgcgacagggagca
gagctcgcagcagaaaaaaccttcaataagctcatcattaatggccgcagactggcggtg
aagtggggccgatcgcaggccgctaaagggaaggatggcaaggacgggttcgatgagatg
ggcacgggactagaaccagtaccgggtctccctacaactctaccaccacctcctgctctg
gagcaggaagcacctgctaactacttcaacctggaccccagcagctctcctgcagtcatg
aacatcagtctgccacctccacccggactcccaaacccaccgccaccaggttttggacct
cccatgttccatcccatgggtcctcctccacctcctccgatggctttgagacctccaggc
cacattcattatccttcccaggatcctcagcgcatgggagcgcatgctgctgttcgccac
agcgactga
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