Labeo rohita (rohu): 127182133
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Entry
127182133 CDS
T09007
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
lroh03083
Polycomb repressive complex
lroh04110
Cell cycle
lroh04330
Notch signaling pathway
lroh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127182133 (hdac1)
03083 Polycomb repressive complex
127182133 (hdac1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
127182133 (hdac1)
04350 TGF-beta signaling pathway
127182133 (hdac1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
127182133 (hdac1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127182133 (hdac1)
Enzymes [BR:
lroh01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
127182133 (hdac1)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
127182133 (hdac1)
HDAC complexes
Sin3A-HDAC complex
127182133 (hdac1)
BRAF-HDAC complex
127182133 (hdac1)
REST complex
127182133 (hdac1)
SHIP complex
127182133 (hdac1)
MiDAC complex
127182133 (hdac1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
127182133 (hdac1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
127182133 (hdac1)
Chromatin remodeling factors
NuRD complex
127182133 (hdac1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
127182133
NCBI-ProteinID:
XP_050993211
LinkDB
All DBs
Position
19:9922731..9929644
Genome browser
AA seq
484 aa
AA seq
DB search
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRISIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKPKRVKTEEEKDGEEKKGEPTDVKEEEKASEEKMDTKGPKEE
LKTV
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagttctcaaggaacaaagaagaaagtttgctattattatgatggggatgtt
gggaattactactacggccagggccatcccatgaaaccccacagaatccgcatgacccac
aacctcctgctcaactatgggctgtataggaaaatggaaatttatcggcctcataaagcc
aatgctgaagaaatgaccaagtatcacagtgatgattacatcaaattcctccgttccatt
cgcccagacaacatgtctgagtacagcaagcagatgcagagatttaatgtaggggaggat
tgtcctgtctttgacggcttatttgagttctgtcagctctcaacaggtggatctgttgct
ggggctgtgaaactcaacaaacagcagacagatattgccattaactgggcaggaggcctt
catcacgcaaagaaatctgaggcatctgggttttgctatgtcaatgacatcgtactcgcc
attctggagctgctcaagtaccatcaaagagtgctttacatcgacattgacattcatcat
ggggatggagttgaggaagctttctacacgacagaccgtgtcatgactgtgtccttccac
aagtatggagagtatttccctggaactggagacctcagagatattggtgcggggaaggga
aaatactatgcagtgaattacccgctcagggatggtatagatgatgagtcctatgaagcc
atattcaaacctatcatggccaaagtgatggagatgtaccagcccagtgctgtggtgctc
cagtgcggtgctgattctctgtctggtgatagattgggatgctttaacctcaccatcaaa
ggtcatgctaagtgtgtggagtacatgaagagctttaacctgcccctgctcatgctggga
ggtggaggctacaccatcaggaacgtggcccgctgctggacctatgagacggctgtagcg
ctggacagcaccattcccaacgagctcccgtacaatgactactttgagtattttggacct
gatttcaagcttcacattagcccctccaacatgaccaatcagaatacaaatgactacctg
gaaaagatcaaacagcgtctgtttgagaatctgcggatgttgcctcacgccccaggggtt
cagatgcaggcgatcccagaggatgctgttcaggaagacagtggagatgaggaggacgac
cctgacaaacgcatctccatccgtgcccatgacaagcggatagcctgcgacgaggagttc
tcagactctgaggacgaaggacagggcggcaggagaaacgcagccaattacaagaagcct
aagcgagtgaagactgaagaagagaaggatggagaagagaagaaaggtgagccaacagat
gttaaagaagaagagaaagcttcagaggaaaaaatggacacaaaggggccaaaagaagaa
ttaaaaacagtctga
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