KEGG   Labeo rohita (rohu): 127182133
Entry
127182133         CDS       T09007                                 
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03082  ATP-dependent chromatin remodeling
lroh03083  Polycomb repressive complex
lroh04110  Cell cycle
lroh04330  Notch signaling pathway
lroh04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    127182133 (hdac1)
   03083 Polycomb repressive complex
    127182133 (hdac1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    127182133 (hdac1)
   04350 TGF-beta signaling pathway
    127182133 (hdac1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    127182133 (hdac1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lroh03036]
    127182133 (hdac1)
Enzymes [BR:lroh01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     127182133 (hdac1)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     127182133 (hdac1)
   HDAC complexes
    Sin3A-HDAC complex
     127182133 (hdac1)
    BRAF-HDAC complex
     127182133 (hdac1)
    REST complex
     127182133 (hdac1)
    SHIP complex
     127182133 (hdac1)
    MiDAC complex
     127182133 (hdac1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     127182133 (hdac1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    127182133 (hdac1)
  Chromatin remodeling factors
   NuRD complex
    127182133 (hdac1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 127182133
NCBI-ProteinID: XP_050993211
LinkDB
Position
19:9922731..9929644
AA seq 484 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRISIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKPKRVKTEEEKDGEEKKGEPTDVKEEEKASEEKMDTKGPKEE
LKTV
NT seq 1455 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaagaaagtttgctattattatgatggggatgtt
gggaattactactacggccagggccatcccatgaaaccccacagaatccgcatgacccac
aacctcctgctcaactatgggctgtataggaaaatggaaatttatcggcctcataaagcc
aatgctgaagaaatgaccaagtatcacagtgatgattacatcaaattcctccgttccatt
cgcccagacaacatgtctgagtacagcaagcagatgcagagatttaatgtaggggaggat
tgtcctgtctttgacggcttatttgagttctgtcagctctcaacaggtggatctgttgct
ggggctgtgaaactcaacaaacagcagacagatattgccattaactgggcaggaggcctt
catcacgcaaagaaatctgaggcatctgggttttgctatgtcaatgacatcgtactcgcc
attctggagctgctcaagtaccatcaaagagtgctttacatcgacattgacattcatcat
ggggatggagttgaggaagctttctacacgacagaccgtgtcatgactgtgtccttccac
aagtatggagagtatttccctggaactggagacctcagagatattggtgcggggaaggga
aaatactatgcagtgaattacccgctcagggatggtatagatgatgagtcctatgaagcc
atattcaaacctatcatggccaaagtgatggagatgtaccagcccagtgctgtggtgctc
cagtgcggtgctgattctctgtctggtgatagattgggatgctttaacctcaccatcaaa
ggtcatgctaagtgtgtggagtacatgaagagctttaacctgcccctgctcatgctggga
ggtggaggctacaccatcaggaacgtggcccgctgctggacctatgagacggctgtagcg
ctggacagcaccattcccaacgagctcccgtacaatgactactttgagtattttggacct
gatttcaagcttcacattagcccctccaacatgaccaatcagaatacaaatgactacctg
gaaaagatcaaacagcgtctgtttgagaatctgcggatgttgcctcacgccccaggggtt
cagatgcaggcgatcccagaggatgctgttcaggaagacagtggagatgaggaggacgac
cctgacaaacgcatctccatccgtgcccatgacaagcggatagcctgcgacgaggagttc
tcagactctgaggacgaaggacagggcggcaggagaaacgcagccaattacaagaagcct
aagcgagtgaagactgaagaagagaaggatggagaagagaagaaaggtgagccaacagat
gttaaagaagaagagaaagcttcagaggaaaaaatggacacaaaggggccaaaagaagaa
ttaaaaacagtctga

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