Limnoglobus roseus: PX52LOC_06260
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Entry
PX52LOC_06260 CDS
T06556
Name
(GenBank) Calx-beta domain protein
Organism
lrs
Limnoglobus roseus
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calx-beta
Big_9
FG-GAP
Cadherin_5
FG-GAP_3
Sialidase
DUF3642
Motif
Other DBs
NCBI-ProteinID:
QEL19200
UniProt:
A0A5C1AK04
LinkDB
All DBs
Position
7130077..7139343
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AA seq
3088 aa
AA seq
DB search
MTLNHWLKQFLGSNNRTTRRTRPTARPRLLSLEDRTVPASLSATLTAGNLVVLDTDATGK
NNDLSISVVGTDLVVTDAAETFISPPDVGTLSNGDQTLTVPLASITGNTVTINGAGGDDK
YTTLVNSIPSTLQVQLTDNAGANAYTYNLTGATKATLASGDRGAAKLQATSPAAKGMVTQ
ADTSSTDSTFTITNAASNSLQITLNGGGTANGQKDTTTILRDASANQVVTISDAVQGKLF
GYTVPVASVNSLTITGTADDDDLQIGGFGGTSTTTPLPSSTTTNYNAGGGTNSLEFISGI
TGGPTYTFTTETSGSANLGRLLNYTGVGLPIIDSTTPTLTQGATSTFNFNTTANGGSEVI
TLSDVGPAGDRRVRIDSDVGGQAVEFAYPPTGIGQFQASIVINAGNGNDTVNIDSLDSAA
LPGLSLIGGNGTDTVNVNTSMTFATNLGLRVTAEKFTTAAGAAITVAAGTAAPFIAITAD
EVVLAPTSSLTGTGTNATVQFGPATAGLGLDLGGPGVPGSTVGLSAAELATISILILQLG
TGTQVGNQFGPVTVSADVTFPTPTNVQIVALGDIVQNANAGSINTAGGSVFALPIYDKVN
GPTAVYRPTRAGTDVFGAITIPTALISGTGIGLAVDISGNAPDVGYTQFNVAGAVDLTDY
ILLPSGAYLPQVGDVFTIVSATSVTGRLFDPTSDPANGVQRTLNDNDIFSFNGNTLRINY
TATAVTLTVITPTISATLDAGNNLTVLDTDGTGKANNFNISVVGTNLIISDTVETFISAP
AGGALSSDGKTLTVPLASISVGTITVNGAGGNDTYTTLVNTIPAAYSVVLADNAGANSYN
YDLTGATTVALASGSRGAVKFQATAPTAGGLVSQVDTSSTTSTFTILNAATNSLQVTLNG
GGTANGQRDTTSISRVGTNQVVSIVDATLGTIFGYSVLQTSLNSIAVVGTTDDDLVQLTW
GSLGQLPLPTSGLTYNAGAGGADGLELVSGPVTEVGYGFLSPTSGSIGVLSGGGSVTINY
TGIDQTIRDGLTASGGSNPGRGFTYTSASETITVTDNGTPMDGRIQIAAATAPAVEFLYP
VSGTTTTIDGGDGDDVININGVDTNSPSGFILSGGLGADTINLNTDVTFQTNNRLVVVAE
RFTTGANVDVGISGGGFFDIRADAVELRAGSTITSGAANNVIAPLTPGVRMDLGGADAPG
VLGLSAAELAGITATRLTYGNTTGTAAGIPGGITVSADISPVLSAGSPRALFLSTATGNI
VQNQDAGSINAGTAPVSISTVANLANRYLPLRSGTDVTAAQVAFAGVLGINIAGNTVDTG
YTQFNVTGTLGIQTGSTTRLELTGNYVPQAGDVFTIVSSTGSRTGTFRDVNGVALAENAT
IPFNGQTLRINYTNRVVTLTVVPSVTLDAANNLVITGSGGDDDISVAVVGTDLVVTNMAA
AFANPTIPGATSSNGGNTITIPLASIGGTSAIVNAGPGDDTLTIDFSGGSIPLGIQFNGG
AGGNDKLVLGPGTTTSVTHTFTNANDGSITLAGDLAGTFDYTGLEPIIDNLNADDRTFTF
NGGSEAITVANGGTLGNLISSTLAESVDFANPNKSLTINAGTGADTVTITGLDTAFGATL
TIDGGSGTDTVNLNAGITFAAGNSLAVTAEKVTTGPAAALITSGAGTLSITADEIALDAT
SALQSVGLVAIQPQSAGQNIDLGGADAVGTLGLTAAELDTITAGTLQIGTTGNGTITISD
VIDLTDGPVIGTLLLSTAKTVTSSSTTPNSLAVGTLDITAGTGIGTGANPLAVSVTTLST
DTSGGNGDQFLAAISLVTIGGNDLIAGTGLVTLTEGAFALTPTGSIEGELQLGDGLGTGA
MLAGNGTVNGSVTALSDGTISPGNSPGVIAITGDLTLTAGSVVAVEVNGSATAGVDYDQI
QVSGTVSLSGATLVTSGTGSVAVGNAVRVIDNQGPNPVVGAFAGLAEGATRTINGVAFSN
TYLGGTSNDVVLLSLASASIADVSAAEGNAGTTTFTFTIALTAASTSTVTLDWATADGTA
TEGDGDYVGASGTVTFAPGQTTQTFTVTVNGDLKREPDETFVVNLSNPLGTVLANSQAVG
TILNDDAVPVVSIGDVSAAEGNVGTTAFTFAVTLSNPSSSAVTVNFATADGTASAGSDYQ
AATGTVTFLPGETSKTITVLVNGDTTSEVDETFVVNLNTTTNAAIGTGTATGTITNDDAV
PTVSINDVTQAEGNAGTTVFTFTVALSAASGKTVTVNFVTSDGTALAGSDYQTASGVVTF
LPDETSKTITVLVNGDTTSEPDEAFIVALSAATNATIADGQGVGTITDDDVVPVVSINDV
TQAEGDAGTTTFTFTVTLAAASGKTVTVNYATANGSVLGGTDYQGTSGTLTFLPGETSKT
VTVLVNGDMQFEGDETFVVNLSAATNATIGTGTGTGTITNDDSSPVVTLSLAESPFAENG
GIATVTATLSNPSAFPVRITLSFAGTAILGTDYDASAGFIVIPPGALTGSITLTGLDNSL
DAPDKTILLAVAGVNGGSTASPQQVTATIADDDSPVAVGESYSTVEDTALAVTAAGGLLI
NDNAAPGSTVELVASGPAHGTLTLQSDGSFAYTPATDFNGPDAFQYRVRNAVGEVSDPVI
VSLNVTAVNDPPSFVKGPNQIDPRGTGVQAVSGWATSISAGPADESSQTLTFQVTSDNPA
LFAVQPAIDPATGTLTYTPAAFAFGTATVTVRLVDSGTGANTSPAQTFTITVNKHPTESR
AVSQAELPLFAVGADATGPATVTVYKADGSVASTVTPFPGMTGGVRTAIADVNGDGVGDL
IAGTGPGVVARVRVFDAVTGAMLFDITPFEDFTGGVFVAAGDFTGDGMADLVVTPDLSGG
PRVEVYRGGDFTRIANFFGIDDPDFRGGARATAGDINGDGIADLVVSAGFGGGPRISVYD
GAALAQGKQVHPVGDFFLFEATLRNGAYVAVGDVDGDGLGDIIGGAGPGGGPRVLVISGR
TLLGAGADAAISSPVANFFAGDTSNRDGVRVAAKDLDGDPFADVVTGAGSGGGSRVTTYR
GATLKAGSSTPDQDFDAVPDFTGGVFVG
NT seq
9267 nt
NT seq
+upstream
nt +downstream
nt
atgactctcaaccactggctgaagcaattcctcggttccaacaaccgcacgacccggcgg
acccgcccgacggctcgcccccgcctcctttcgctggaagaccgcaccgtcccggcgtcc
ctctcggccacgttgaccgccggcaacctcgtcgtcctcgacacggacgccacgggcaag
aacaacgacctgagcatctcggtcgtcggaacggacctcgtcgtcacggacgcggcggag
acgtttatctcgccgccggacgtggggacgctcagcaacggcgaccaaacgctgaccgtt
cccctggcgtcgatcaccggcaacacagtcacgatcaacggcgccggcggtgatgacaag
tacaccacactcgtcaacagcatcccctcgaccctccaagtgcagttgaccgacaacgcc
ggagcgaacgcttacacatacaacctcaccggcgcgaccaaggccacgctcgcatcgggt
gatcggggggcggcaaagctccaggcgacgtcgccggcggcgaagggcatggtcacgcag
gccgatacatcgtcgacggattctaccttcacgatcacgaacgccgccagcaacagtctc
cagatcacgttgaacggcggcgggacggcgaacggccagaaggacaccacaacaatcttg
cgcgacgcctcggccaatcaggtcgtcactatctccgacgccgttcaagggaaactcttt
ggttacaccgtgccggttgccagcgttaacagtctgaccatcacgggtactgccgacgac
gacgacctgcaaatcggcgggttcggtgggacatcgacgacgacgccgttgccgagcagc
acgaccacgaactataacgccggcggcggaacgaacagcctggagttcatctcggggatc
acgggggggccgacctacacgttcacgaccgaaaccagcggctcggccaacctcggccgg
ctgctcaactacacgggcgtcggcctgccgatcatcgacagcacgacgccgacacttacg
cagggggcgacgagcaccttcaacttcaacacgacggccaacggcggcagcgaagtcatc
accctgagcgatgtcggcccggccggcgaccgccgggtacggatcgattcggacgtcggc
gggcaggcggtcgagttcgcgtacccccccactggcatcgggcagttccaggcctccatc
gtcatcaacgccggcaacggcaacgacaccgtcaacatcgacagcttggactccgcagca
ctcccgggcctcagcctgatcggcgggaacggtaccgacacggtcaacgtcaacacgagc
atgacgttcgccaccaacctcggcctgagggtgacggccgagaagttcacgacggcggcg
ggcgcggccatcacggtcgcggccgggacggccgccccgttcatcgccatcacggccgac
gaggtggtgctagcccccacgtcgtcactcaccggtaccggcacgaatgccaccgtccag
ttcggcccggcgacggccggactaggcctcgacctcggcgggccgggcgtccccgggagt
acggtcggcctgtcggccgcggaactggccacgatttccatcctgattctccagttgggc
accggcacccaagtcggcaaccagttcggccccgtcaccgtttccgcggacgtgacgttt
ccgacgcccacgaacgtccaaatcgtggcgctcggcgacatcgtccagaacgccaatgcg
ggctcgatcaacaccgccggcgggtcggtgttcgcgctccccatctacgacaaggtcaac
gggccgacggccgtgtaccggccgacccgggcggggacggacgtgttcggcgccatcacc
atcccgacggccctgatctcgggcaccggcatcggcttggccgtcgacatcagcggcaac
gcgccggatgtgggctacacgcagttcaacgtggccggggcggtcgacctcaccgattac
atcctgctcccgagcggcgcctacctgccgcaagtgggcgacgtgttcaccatcgtttcc
gcgacgagtgtgaccggtaggttattcgacccgacctccgacccggccaacggcgttcag
cgcacgctcaacgacaacgacatcttttcgttcaacggcaacacgctccgcatcaactac
accgccaccgccgtgacgctgaccgttatcaccccgacgatctccgccacactcgatgcg
ggcaacaatctgaccgtcctcgacacggacggaacgggcaaggccaacaacttcaacatc
tccgtcgtcggcacgaacctcatcatctcggacacggtggagacattcatttccgccccg
gcgggaggggcgctgagcagcgacggcaagacactgaccgtcccgctcgcttcgatcagc
gtcggtacgattacggtcaacggtgccggcggtaacgacacgtatacgacgctcgtcaac
acaatccccgcggcctacagcgtcgtgctggccgacaacgccggggcgaatagctacaac
tacgacctcaccggggcaacgacggtggcgctggcgtccggaagccgtggcgcggtaaag
tttcaggccaccgcaccgacggcgggcggtttggtctcgcaggtggacacgtcttcgacg
acttcaacgttcacgattctcaacgccgccacgaacagccttcaggtcacgttgaacggt
ggcggaaccgcgaacggccagagggacacaacctcgatcagtcgcgtcgggacgaaccaa
gtggtctccatcgtggacgccactctcggcacgatcttcggctattccgtgctgcagacg
agcctgaatagcatcgccgtcgtggggacgaccgacgacgacctcgtgcaactgacgtgg
ggcagtttaggccagttgcctctgccgacgtcgggcctgacctacaacgctggggccggc
ggggccgacggtttggaactcgtctccggccctgtgacggaggtcgggtacgggttctta
agcccgacctccggtagcatcggcgtcctctccggcggcggcagcgtgacgatcaactac
acgggcatcgatcaaacgatccgcgacgggctgacggcgagcggggggtcgaacccgggc
cggggcttcacctacaccagtgcgtccgagaccatcaccgtcaccgacaacggtacgccg
atggacgggcggatccagattgccgcggccaccgccccggcggtcgaattcctctacccg
gtcagcggcacgacgacgaccatcgacggcggggacggggacgacgtcatcaacatcaac
ggcgtcgacacaaatagcccgtcggggttcatcctcagcggcggcctcggcgcggacacg
atcaacctgaacacggacgtgacgttccagaccaacaaccgcctcgtcgtggtggcggag
cggtttacgacgggagcgaatgtcgatgtcggcatttccggcgggggctttttcgacatc
cgggctgacgccgtggaattgagggccgggtccacgatcacgagcggggcggccaacaac
gtcatcgcgccgctcacccccggcgtgcggatggacctcggcggggcggatgcgccgggc
gtactcggcctgagcgccgccgaactggccggcatcactgctacccgcctcacgtacggc
aacacaaccggcaccgctgccggcatcccgggtggcatcaccgtctctgcggacatcagc
ccggtgctctctgccggtagccctcgcgctctgttcttgagcacggccaccgggaacatc
gtccagaaccaggacgccggctcgatcaacgccgggacggctccggtgagtatcagcacg
gttgccaacttggcgaaccgatacttgcccttgcggtcgggtacggacgtgacggctgct
caggtcgccttcgcgggtgtcctgggcatcaacatcgccggcaacacggtggacaccggg
tacacgcagttcaacgtgaccggcacgctcggcatccagaccgggtctacgacgcgcctg
gaactcacgggcaactacgtcccccaagccggcgacgtgttcacgatcgtctcctccacg
ggaagccggaccggcacgttccgggacgtgaacggcgtcgcgctggccgagaacgcgacg
atcccgttcaacggacagacgctccggatcaactacacgaaccgggtcgtgacgctgacc
gttgtgccgtccgttacactggacgccgcgaacaatctggtcatcacgggctcgggcggg
gacgacgacatctcggttgccgtggtcgggaccgatctcgtcgtcacgaacatggcggct
gccttcgccaacccgacgatccccggcgcgacgtcgtcgaacggcggcaacacgatcacc
atcccgctggcctcgatcggcgggacgagcgccattgtcaacgccggccccggcgacgac
acactcaccatagacttctccggcggcagcatcccgttgggcattcagttcaacggcggg
gccggcgggaatgacaagctggtcctcgggccgggcacgacgaccagcgttacgcacacg
ttcaccaacgcgaacgacggcagtattacgctcgccggggatctcgccgggacgttcgac
tacactggccttgagccgatcatcgacaacctcaacgccgacgatcgcaccttcacgttt
aacggcgggtcggaagcgatcacagtggcgaacggcggcacgctcggcaacctgatttcg
tccaccctggccgaatcggtggacttcgcgaacccgaacaagtcgctgacgatcaacgcc
gggaccggcgcggataccgtcaccatcaccggcctcgacaccgcgtttggtgccaccttg
acgatcgacggcgggagcggcacggacaccgtgaacttgaacgcgggcatcaccttcgcc
gccgggaacagcttggccgtgaccgctgagaaagtgacgacggggccggccgcggccttg
attacgtccggtgctgggaccctttctatcaccgccgacgaaatcgccctcgacgccaca
tcggccttgcaatccgtcggtttagtcgcgattcagccgcaatcggcgggtcagaacatc
gacctcggtggagccgacgccgtcggcacgctcggcctgacggcggccgaactcgacacg
atcaccgccggcacgttgcagatcggcacgaccgggaacgggaccattaccatttccgat
gtcatcgacttgaccgacggaccggtcatcggcacgctcctgctctcgacggcgaagacc
gtaacaagtagcagcacaacgccaaacagtcttgccgtaggcacgctcgacatcaccgcc
ggcacgggcatcggcacgggtgccaacccgctcgccgtaagtgtcacgacgttgagcacg
gacaccagcgggggcaatggcgatcagttcctcgcggcgatctctctcgtcacgatcggc
ggcaacgacctcatcgccggaaccgggctagttaccctgaccgaaggggcgttcgcactc
acacccacggggagtatcgaaggcgaactccaactcggcgacggcctcggcacaggcgcg
atgctggcagggaacggcacggtcaacggcagcgtgaccgcactttccgatggcacgatc
agccccggcaacagtccgggcgtcatcgccatcacgggcgacctcaccctgaccgccggg
agcgtcgtcgcggtcgaggtgaacgggtccgccacggcgggggtggactacgatcagatt
caagtgagcgggacggtcagcctcagcggtgcgacgttggtcacaagcgggaccggcagc
gttgcggtgggcaacgcggttcgcgtcatcgacaaccaggggccgaacccggtagtcgga
gcctttgcggggctggcggaaggagcgacccgcacgatcaacggcgtcgccttctcgaac
acgtacctcggtggcaccagcaacgacgtcgttctcctctccctcgcgtccgcctcaatc
gccgacgtgtcggcggccgaaggcaatgcggggaccacgacgttcaccttcacgatcgcc
ctgaccgcggccagcacgagtaccgtcacgttggactgggcgacggccgacggtaccgcc
accgaaggcgacggcgactacgtgggggcttccggcacggtgacgttcgcccccggccag
acgacccagacgtttaccgtgactgtcaacggcgatttgaagcgcgagccggacgagacg
ttcgtggtgaacctgtcgaacccgctgggaacggtcctcgcaaacagccaggccgtgggc
acgatcctcaacgacgacgcggtgccggtcgtgagcatcggcgatgtgtcggcggctgaa
ggaaatgtcgggacgactgcgttcaccttcgccgtcaccctgagcaatccgagtagttcg
gccgtcacggtgaacttcgccacggcggacggcacggcgtcggcggggagcgactaccaa
gccgcgacggggaccgtgacgttcctccccggcgagacgtcgaagaccattacggtcctc
gtcaacggtgacaccacgtcggaagttgacgagacgttcgtcgttaatttgaacaccacc
acgaacgcggcgatcggcacgggtacggcgaccgggacgatcactaacgacgacgcggtg
ccgacggtcagcatcaacgacgtcacgcaggccgaggggaacgctggaaccacggtgttc
acgttcacggtggccctgagcgcggccagcgggaaaacggtcacggtgaacttcgtcacg
tcggacggcacggccctggcggggagtgactaccaaacggcgtcgggggtggtaacgttc
ctccccgacgagacgtcgaaaaccatcacggtcctcgtcaacggcgataccacgtcggaa
cccgacgaggcgtttatcgtggccctatcggccgcaacgaacgcgaccatcgccgacggc
caaggggtgggcacaatcaccgacgacgacgtggtgccggtggtgagcatcaatgatgtc
acgcaagccgagggagatgctggaacgacgacgttcacgttcacagtgaccctggccgcg
gccagtgggaagaccgtcacggtgaactacgccaccgccaacggcagcgttcttggaggt
accgactaccagggcacgtcgggcacgttgacattcctcccgggcgagacgtcgaagaca
gtcaccgtgctggtcaacggcgatatgcagttcgagggcgatgagacgttcgtcgtgaac
ctgtccgccgccacaaacgccaccatcggcacgggtacggggaccgggacgatcaccaac
gacgattcctccccggttgtcacgctctcgctggccgagagcccgttcgccgagaacggc
gggatcgcgacggtgaccgccacgctttctaacccgtccgcgttcccggttcggatcacc
ctctcgttcgccgggacggcaattctggggacggactacgacgcctcggccgggttcatc
gtgatcccgccgggggcattgaccgggagcatcaccctgaccgggctggacaacagcctt
gacgccccggacaagactatcctcttggcggtggccggcgtcaacggtggatcgacggcg
agcccgcagcaagtcaccgcgacgatcgcggacgacgactcgccggtcgcggtcggcgaa
agttactccaccgttgaggacaccgcccttgctgtcaccgcggcgggcggcctgctcatc
aacgacaacgcggccccgggttcgacagtcgagctggtcgcgtccggccccgcgcacggc
accctcacgttgcagtccgacgggagcttcgcctacaccccggcgaccgacttcaacggc
ccggacgccttccagtaccgcgtgcggaatgcggttggcgaagtttcggaccccgtgatc
gtgtccttgaacgtcacggccgtaaacgacccgccgtcgttcgtgaaggggccgaatcag
atcgatccccgtgggaccggggttcaagcagtctccggctgggcgaccagcatctcggcg
ggaccggccgacgaaagttcacagacgcttactttccaggtgacgagcgacaatcccgca
ctgttcgcggtgcaaccagcgatcgaccccgcgaccgggacgctcacgtacacccccgcc
gcgttcgccttcggtacggccaccgttaccgtgcgattggtagacagcgggaccggggca
aacacctcgcccgctcagacgttcacaatcacggtgaacaagcacccgaccgaaagccgg
gcggtgagccaggccgagcttccgctgttcgccgtcggggcggacgccaccgggccggcg
acggttacggtgtacaaggccgacggatcggtcgcatcgaccgtgaccccgttccccggc
atgaccggcggcgtgcggacggccattgcagatgtcaacggggacggcgtcggcgatctg
atcgccgggaccggccccggggtggtcgcccgcgtccgggtgttcgacgccgtgaccggg
gcgatgctgttcgacatcacgccgttcgaggacttcaccggcggtgtgttcgtcgcggcc
ggcgacttcaccggcgacggcatggccgacctggtggtgacgccggacctgtccggtggg
ccgcgggttgaggtctaccggggcggcgacttcacccggatcgccaacttcttcggcatc
gacgacccggacttccgcggcggcgcgcgggccacggccggggacatcaacggcgacggg
atcgccgatctcgtggtatctgccggtttcgggggggggccgcgaatctcggtgtacgac
ggggcggcattggcccagggcaagcaggtgcacccggtcggcgacttcttcctgttcgag
gcgaccctgcggaacggggcgtacgtcgcggtcggggacgtggacggcgacggtctcggc
gacattatcggcggggccggccccggcggtggcccgcgggtactggtaatttccgggcga
acgttgctcggggcgggggcggatgccgcgatcagcagcccggtcgcgaatttcttcgcc
ggggacacgtccaaccgggacggagtgcgagtcgcggcgaaggatctcgacggcgatccg
ttcgcggacgtcgtgaccggggccggaagcggtggcggcagccgggtgacgacttaccgc
ggggcaacactgaaggccggctcatcgaccccggaccaggatttcgacgccgtccccgac
ttcaccggcggagtatttgtcggctga
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integrated database retrieval system
