Ligilactobacillus salivarius JCM1046: LSJ_0241
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Entry
LSJ_0241 CDS
T03340
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSJ_0241 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsj03021
]
LSJ_0241 (rpoB)
03400 DNA repair and recombination proteins [BR:
lsj03400
]
LSJ_0241 (rpoB)
Enzymes [BR:
lsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSJ_0241 (rpoB)
Transcription machinery [BR:
lsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSJ_0241 (rpoB)
DNA repair and recombination proteins [BR:
lsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSJ_0241 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AIR09989
UniProt:
A0A089QA84
LinkDB
All DBs
Position
257609..261199
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHLVKYGKHRVRRSYSRIKEVLDLPNLIEVQTDSYKWFLDEGLREMFDDIMPIEDFQG
KLSLEFVDYQLLEPKYTVEEARQHDANYSAPLHVTLRLINHETGEIKSQDVFFGDFPLMT
KQGTFIINGAERVIVSQLVRSPGVYFNSELDKNGRTNYGTTVIPNRGAWLEYETDAKNVA
YVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSLMLTLEKDVHKNMDDSRVEESLK
DIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAPVGRYKINKKLDLKTRLLNLTVAETL
ADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKTFTFHPSEEGVVQEPMTLQIVKVYSP
KDPEKVVNVIGNANVDIQFKHITPADIVASMNYFFNLQEGMGSTDDIDHLGNRRTRSVGE
LLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT
NPLGELSHKRRFSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY
ARINKYGFVETPYRRVSWETHKVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVDDVVMA
RKKDDDVEISTEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIKPH
APLVGTGIEYKAAHDSGVALISEHEGTVEYVDAREIRVRRDDGSLDKYKLMKFHRSNGGK
NYNQTPIVRVGDRVDADEVLADGPAMENGELALGQNPLIAFMTWDGYNFEDAIAINERLV
KEDVYTSIHIEEHESEARDTKLGPEEITREIPNVGEDALKNLDEFGIIRIGAEVKDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVQDVKIFTREGGDELS
PGVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPMGV
PSRMNIGQVLDLHLGMAARKLGIHVASPVFDGARDEDIWSALQEAGLPGDGKTVLYDGRT
GEAFDNRIAVGVMYYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGMDM
KVLDADKNEIELRDMDDEDDDIVNVDALKKFAKEQEEKKAKEAEQETAEKEETKTE
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacacttagtaaaatacggtaaacaccgtgtacgtagaagttactcgcgaatt
aaagaagttcttgatctacctaacttgattgaagttcaaactgattcttacaagtggttt
ttagatgaaggtcttcgtgaaatgtttgatgacattatgccaattgaagattttcaaggt
aaattatcacttgaatttgtagattatcaacttttagaaccaaagtatacagttgaagaa
gcacgtcaacatgatgctaattattcagcaccattacatgttactttacgcttaatcaac
catgaaactggtgaaattaagtcacaagacgtattctttggtgatttcccattgatgact
aagcaaggtacattcattattaacggggcagaacgtgttattgtttcacaattagttcgt
tctccaggtgtatacttcaactccgaattagataagaatggtcgtactaactacggtaca
actgtaattcctaatcgtggggcttggttagaatatgaaacagatgcaaagaatgtagca
tatgtacgtattgatcgtactcgtaaaattccattaacagaacttatccgtgctttggga
tacggttctgataatgaaattgtagaaattttaggatctaatagcgatagcttgatgctt
actttggaaaaagatgtacataagaatatggatgattctcgtgtagaagaatctttgaaa
gatatttatgaacgtctacgtccaggtgaaccaaagactgctgattcatcgcgtagtttg
ttaacagctcgtttctttgatccaaagcgctatgatttagcacctgttggtcgttataag
attaacaagaagttagatttaaagacacgcttattgaatttaactgttgcagaaacatta
gctgatcctgatacaggcgaaattattgtaaataaggatgaagttattgataagcaagtt
atggataaattagctccatacttagcaagagatgacttcaagacatttactttccatcca
tctgaagaaggtgttgttcaagaaccaatgactcttcaaattgtgaaagtatattcacca
aaggatccagaaaaggtagtaaatgttattggtaatgcaaatgttgatatccaattcaag
cacattacaccagctgatatagtagcttccatgaactacttcttcaatttacaagaaggt
atgggctcaacagatgatattgaccacttgggtaaccgtcgtactcgctctgtaggtgaa
ttattacaaaaccaatttagaataggtttatcacgtatggaacgtgttgtacgtgaacgt
atgtcaattcaagatacatcaactgttacaccacaacaattgattaatattcgtccagtt
gttgcttcaattaaagaattcttcggaagttctcaattgtcccaattcatggaccaaact
aatccattgggtgaattgtctcataagcgtcgtttctctgctttgggacctggtggtttg
actcgtgatcgtgctggatacgaagttcgtgacgttcactatacacactatggtcgtatg
tgtcctatcgaaactcctgaaggtcctaacatcggtttgatcaacagtttatcttcttat
gctcgtattaataagtatggttttgttgaaacaccatatcgtcgtgtatcttgggaaaca
cataaagttacagacaaaattgactacttaacagccgatgaagaagataattacgttatc
gcacaagctaactcaccattaaatgatgatggttcctttgttgatgatgtagttatggct
cgtaagaaagatgatgacgttgaaatttcaactgaaaaagttgactacatggacgtttca
cctaaacaagtagttgctgttgctacagcatgtattcctttcttggaaaacgatgactct
aaccgtgctttgatgggtgctaacatgcaacgtcaggctgttcctttgattaagccacat
gcaccattagttggtacaggtattgaatacaaagctgcacatgactctggggtagcattg
atttctgaacatgaaggtacagttgaatatgtagatgctcgtgaaattagagttcgccgt
gacgatggttctttggacaagtataaattgatgaaattccatcgttctaatggtggtaag
aactataaccaaacaccaattgtacgtgttggagacagagtagatgctgatgaagtatta
gctgacggaccagctatggaaaatggagaattggctttaggtcaaaatccattgattgca
tttatgacatgggatggttataacttcgaagatgctatcgcaattaacgaacgtttagtt
aaagaagatgtttatacatctattcatattgaagaacatgaatctgaagctcgtgatact
aaattaggacctgaagaaatcacacgtgaaattcctaatgttggtgaagatgctcttaag
aaccttgacgaatttggtattatccgtattggtgctgaagtaaaagatggagatatttta
gttggtaaagtaactcctaaaggtgtaacagaattatctgcagaagaaagattgttacat
gctatcttcggtgaaaaagcacgtgaagttcgtgatacatcattacgtgttcctcacggt
gcaggtggtattgttcaagacgttaaaatctttactcgtgaaggtggagatgaattatcc
ccaggtgtaaatatgatggttcgtgtttacattgctcaaaaacgtaagttacaagttggg
gataagatggctggacgtcacggtaataaaggtactgtttctgttgttattccagaagaa
gatatgccatttatgcctgatggtactccaatcgatatcatgctttctccaatgggtgtg
ccttcccgtatgaacatcggacaagttttggatcttcacttaggtatggctgctcgtaaa
ttaggtattcacgtagcttcaccagttttcgatggtgctcgtgatgaagatatttggagt
gcattacaagaagctggattacctggcgatggtaagactgttttatatgatggacgtaca
ggtgaagcattcgataaccgtatagcagttggtgttatgtactaccttaaacttgcacat
atggttgacgataagattcatgctcgttcaattggaccttactcattagttacacaacaa
ccacttggtggtaaggcacaatttggtggacaacgttttggtgaaatggaagtttgggca
ttagaagcttatggtgctgcttacacattgcaagaaattttgacttacaaatctgacgat
gttgttggacgtgttaagacttatgaagctatcgttaagggcgaaccaattccaaaacca
ggtgttcctgaatcattccgtgttcttgttaaagaattacaagcattaggtatggatatg
aaagttcttgatgctgataagaatgaaattgaattacgtgatatggatgacgaagacgat
gatattgttaacgttgatgcattgaagaaattcgcaaaggaacaagaagaaaagaaagct
aaagaagcagaacaagaaactgctgaaaaagaagaaactaagacagaatag
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