Lepeophtheirus salmonis (salmon louse): 121114430
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Entry
121114430 CDS
T08214
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121114430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsm03036
]
121114430
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
121114430
REST complex
121114430
Heterochromatin formation proteins
Other heterochromatin formation proteins
121114430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
Motif
Other DBs
NCBI-GeneID:
121114430
NCBI-ProteinID:
XP_040564335
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All DBs
Position
1:complement(4771966..4779526)
Genome browser
AA seq
1460 aa
AA seq
DB search
MKRTPGPETHAERIKDGPPFPRAPLLERPGGAGGGGAAVALTATPPNAKGPPLYKAGPPP
ALAPLLAPLRGPPPPPSLSVNASGNPQQQQQQQQQQFQRLKVEDALSYLDQVKFKFGSKP
KVYNDFLDIMKEFKSQSIDTPGVITRVSCLFRGHPELIVGFNTFLPPGYKIEVQRNDSVT
VNMGGLLGPGMQTIVHTPTGVHTMGALGDITAIPNLAAVAASSSSSAASIQPVTPQTPTP
QPAVAIRPVPGTLQHPTKFNSQPPMKENNNSSRPIEPNLLPQNIHLFATTTPPSTQLTSL
TPHLNTASLTLSQPTPIAVTTTSNATVVTCATTIMPTGPPLIQPTPLAPQPAAQPAVITT
TSLPHHPHLPHTPPTANTTTTVVVDRGVANQPIEFNHAINYVNKIKNRFQGQPDVYKQFL
EILHTYQKDQKAIKEGVPPSGNHLTEAEVYTQVSKLFQNQEDLLSEFGQFLPEATNDNAT
SAIMMSNKGLNNDHASAAKKPSVIKHTGLSANSTSKYGIKRPPSGISYPAPKKPKIGVLR
DVSLAEAGKFGTLNEFAFFDKVRKALRNTTVYENFLRCLMLFNQEVISRSELVLVTTPFL
NTHPELFEWFKNFLSYKEGSGGSNSGNGSNNSTESASSPGGVNSSGGTSAPVSEENESNL
PHVIGNRDRVYGDSAVEIDYATCKRLGASYCAVPKSAVAQAQSSKRSQLCREVLNDTWVS
FPTWSEDSQFVTSRKTQYEESIYRTEDERFEFDVILETNRDTIKVLECVQRKMSRMPPEE
AARYKLDDTLGGNSPTIHQRAIRRIYGDRSQDIIEGLKRNPVVAVPIVLKRLSQKDEEWR
EVQKNFNKTWRDQNEKYYLKSLDHQGVNFKQTDVRNLRCKSLQQEIETLYDERHEQMESS
GETINGPHMTLDYSYSAILEDANNLLIHHVKRQPSINKEDKQRIKTLLKYFLMDIFRQSR
QELSDDEKEDNDEDENENYNDSSDKDKDLSIKSTRSRRKLKEDKKDKQSSINKEKEATDR
DIKIENKDGRRTPLHARGMEADETYTHMMCNNNWYLFFRLHNLLCERITKIYNQAVLIAE
EESKEKNSRKESTAVALRLKPKNEIDTEDYYPAFLDMVKNVLDGNMDIITFEDTLREMFG
IHAYIVYTLDKVVMNAVRQLVNLVTEDSSIACQDLFMDESKETATGGQCASANQRQMSEL
LYQKRCEKLLTDQNCMKFLFYHQSGKVTVELLDTDSTSSSSSKQGSKLEEEAHTRKWHKY
IDRFIQPGEDVSHECKNHLILKPVFLPRGIRSYRKSPFGKMKITNKTAVKNDQNSGESPD
EKIKEEGDRDVDDGEGDDDGSKHLNSGGVVYEDNMQCNFNPRSFKVLYVIKSENCFYRRL
ALRRAKESHKTVSQRKSKGFSKWHSGWIEKNVSESQQSSISDWFMGLTDGLIPNKTHKII
KNHSDSTPYRTFFKWRADVS
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaacgccaggacccgagacccatgcggaaaggatcaaggacggacctcctttc
ccaagagctccacttctggagagacctggtggcgccggaggaggaggagcggcagtggca
ctgactgctacccctcctaatgccaagggacccccgctctacaaagcggggcccccgccg
gctctggctccacttctagctcccctccgcgggcccccaccacctccgagcctgagcgtg
aacgcgagcgggaatcctcagcagcaacagcagcagcagcagcagcaatttcagcgcctc
aaggtggaagatgccctctcctacttggaccaggtcaagttcaaatttgggagcaagccc
aaggtgtacaacgactttcttgatatcatgaaggagtttaaaagccaaagcattgacacc
cctggggtcatcacacgggtctcttgcctctttcgaggacatccggagctcattgtgggc
ttcaacacctttctgcctccgggttacaaaattgaagtacaaagaaatgattccgtgacg
gtcaacatgggcggtcttttagggcctggaatgcaaaccattgttcacacacccacaggt
gtccacaccatgggagccttaggagatatcactgctattcccaatttagctgctgtcgct
gcttcctcctcttcttcagctgcgtccattcaacctgtgactcctcagacaccaacacct
cagcctgctgtagctattcgaccagtgcctggcactcttcagcatccaacaaaattcaac
tctcagccaccaatgaaagagaacaataatagcagtaggcccattgaacctaatctgtta
ccccaaaatatccatctctttgccacgactacaccgccctcaacacaacttacttctcta
actccccatcttaatactgcttctctcaccttgtcccagccaactcccattgctgtaaca
actacatctaatgcaactgttgtaacttgtgccacgactattatgcctactgggccacct
ctcatacagccgacgccacttgcaccacaaccggcggctcaacctgcagtcattactacg
acctcacttccccatcatcctcatcttccccacactccccctacagcgaatacaacgacc
actgttgttgtggatagaggcgttgccaatcagcctatcgagttcaatcatgccattaat
tatgtcaataaaattaaaaatcggtttcaagggcaaccggatgtatataagcaattctta
gagattcttcatacctatcaaaaagatcaaaaggctattaaagagggagttccaccctcc
gggaatcatttgactgaagccgaagtctacactcaagtctcaaaactttttcaaaaccaa
gaagatttgctgtcagagtttgggcagtttctccctgaagctacgaatgataatgcgaca
agtgccattatgatgtccaataaaggtctcaacaatgatcatgcttcggcagccaaaaaa
cctagtgttattaaacatactggtctatctgcaaacagcacttccaaatatggaattaag
cgaccaccaagtggaatttcctatcctgcgcctaaaaaaccaaaaattggtgttctccgt
gatgtatcgctcgcagaagctggaaaatttggaacgctaaacgaatttgcttttttcgat
aaagtacgtaaggcccttagaaatactactgtctatgaaaactttctacgttgtcttatg
ctatttaaccaagaagtaatatctcggtcagaacttgttcttgtgactactcccttcctt
aatacacatccagaactctttgaatggtttaaaaactttttaagttataaagaaggaagt
ggtggaagtaacagtggtaacggaagtaataatagtacagagagtgcaagttcccctgga
ggagttaactcatctggtggtacgagtgcacctgtttctgaagaaaatgaaagcaatctt
cctcatgtaatagggaatagagacagggtttatggggattcggcagtagaaatagattat
gctacatgcaaaagacttggtgctagttattgcgccgttcctaagagtgcagtagcacaa
gctcaaagctcaaaaaggtcccaactttgtcgggaagtattaaatgatacatgggtttct
tttcccacttggtcagaagattctcaatttgtgacctctaggaaaacgcagtatgaagaa
tctatttatagaacagaggatgaaaggtttgagtttgatgtgatattggagacaaacaga
gacactattaaagttcttgaatgcgtgcagcgtaaaatgagtcgaatgcctcctgaagaa
gctgctagatataaactagatgatactttgggaggaaattctcctacgattcatcaaagg
gcaatccgtcgtatttatggtgatcgatctcaagatattatcgaagggctcaaaaggaat
cccgttgtagcggttccgatcgtcttaaagagattatcccagaaggatgaagaatggaga
gaagttcaaaagaatttcaacaaaacgtggagggatcaaaatgaaaagtactatcttaaa
tcattggaccatcaaggagttaattttaaacaaactgacgtaaggaatttacgatgtaaa
tcccttcagcaagagattgagaccttgtatgatgagcgtcatgaacaaatggaaagctct
ggtgagacaattaatggacctcacatgacactggactattcctattcggctatcttggaa
gatgcgaataacttattgatacatcacgtcaaaagacaaccttcgattaataaggaagat
aaacaacgtattaagactttgctcaaatattttttaatggatatatttcgtcaatctcgt
caagaactctcggatgatgaaaaggaggataatgatgaggatgaaaacgagaattataat
gactcatcagataaagataaagacttgtccatcaaatctacaagatctcgcagaaaacta
aaagaagataagaaggacaaacaatcatccattaataaagaaaaagaagcaactgacagg
gatattaaaatagaaaataaggatggccgtcgtactccacttcatgcgaggggaatggaa
gcggatgagacttatactcatatgatgtgtaataataattggtatttattctttagactt
cacaatctcttatgtgaaagaataaccaaaatatacaatcaagctgtgttaattgctgaa
gaagagagtaaagagaagaatagtagaaaagaatcaactgctgttgcccttcggctcaaa
ccaaaaaatgaaatagatactgaagattactatccagcctttctggacatggtcaaaaat
gtattagatggtaatatggatatcatcacttttgaagacacattaagggaaatgtttgga
atacatgcatacatcgtatataccctggataaggtggtcatgaatgctgttagacagtta
gtaaatttggtgacagaggattcatcaattgcttgtcaagacttatttatggacgagtcc
aaagaaactgcaactggtggacagtgtgcatcagcaaatcagcgtcaaatgagtgaactc
ctttaccagaaaagatgtgagaaactgttgactgaccaaaattgcatgaaatttctattt
taccaccaaagtggaaaggtgacagttgaactccttgatacggactcaacctcatcttcc
tcctccaaacaaggctcgaaacttgaagaggaagctcatactcgaaagtggcacaagtat
atcgatcgctttatccaaccgggtgaggatgtatcccatgagtgcaaaaatcatttaata
ctgaaaccagtgtttttaccgcggggcatacgttcctatagaaagtctccattcggtaaa
atgaagataacaaataaaacagctgtgaaaaatgaccaaaattcaggagaaagccctgat
gaaaagatcaaagaagaaggagacagagatgttgatgatggtgaaggagatgatgatggg
tccaaacatcttaatagtggaggggttgtatatgaggacaacatgcagtgtaattttaac
ccacgaagcttcaaagtactctatgttattaaaagtgaaaattgtttttatcgccgactt
gctcttcgtagggcaaaagaaagtcataagactgtttctcaacgcaaatccaaggggttt
tccaagtggcattctggttggatcgagaaaaatgtttccgagtctcaacagtctagcatt
agcgattggttcatgggtttgactgatggccttatccctaacaagactcataaaataatt
aaaaatcattctgactcaacgccttacaggacattttttaaatggagggcagacgtgtcg
tag
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integrated database retrieval system
