Lepeophtheirus salmonis (salmon louse): 121115789
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Entry
121115789 CDS
T08214
Name
(RefSeq) high mobility group protein DSP1-like isoform X1
KO
K10802
high mobility group protein B1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03410
Base excision repair
lsm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121115789
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121115789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsm03036
]
121115789
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121115789
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsm04147
]
121115789
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
121115789
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121115789
MMR (mismatch excision repair)
Other MMR factors
121115789
Exosome [BR:
lsm04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121115789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Glyco_hydro_19
DUF348
Motif
Other DBs
NCBI-GeneID:
121115789
NCBI-ProteinID:
XP_040565856
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All DBs
Position
4:complement(34271922..34275382)
Genome browser
AA seq
252 aa
AA seq
DB search
MKDPNAPKKPLSAYFLFSQEERLKVKAEYNDYSITEVAKELGRRWATIDPGVKQTYEQRY
QESRRQYEVAMSAYKPSKKKKDPNAPKQPLSAYFIFSSEERLKVKAEHPSHSICEVAKEL
GRRWADMSPEVKQRYQQMAEEGRQKYDINMAAYRQGNYNPPGAGSGETVLGSPDPIASRT
VVTTATTVGGVITQNSPATQVVAQSNPGDGSASTQQSAEGRVETVATTAVTTAEATSYSG
IETSNDYSSLLQ
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcccaatgcacccaagaaaccacttagtgcatacttcctcttctcgcaagag
gaaagactcaaagtcaaagcagagtacaacgactactccatcacggaggtggccaaggaa
ctgggaagacgttgggcaacaattgatccgggtgtcaagcaaacatacgaacaacggtat
caggagtccaggagacaatacgaagtagccatgtccgcatacaaacccagcaaaaagaaa
aaagatcctaacgcgcccaaacagccactctctgcatactttatcttcagctcggaagaa
cgcctcaaggtgaaggctgaacatcccagtcactccatttgtgaagtggcaaaggaactg
ggtcgtcggtgggcggatatgagtcctgaagtaaagcaacgctatcaacaaatggctgag
gaaggcagacaaaagtatgacataaacatggctgcttatagacagggaaattataatcct
ccaggagctggaagtggtgagactgttctaggatccccggatcccatcgcatcaagaact
gtcgttactactgcaaccactgttggaggtgttattacccaaaattctcctgcaacgcaa
gttgttgctcaaagtaatcctggagatggttccgcctccacgcaacaatctgcagaaggt
cgggttgaaactgtcgcaactacagctgttactactgctgaagcaacgtcctattctgga
atcgaaacgagcaatgattatagcagtttacttcaataa
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integrated database retrieval system
