Lepeophtheirus salmonis (salmon louse): 121130723
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Entry
121130723 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121130723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121130723
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121130723
Spliceosome [BR:
lsm03041
]
Complex A
U2 snRNP components
U2 related factors
121130723
Complex B
121130723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
baeRF_family3
Motif
Other DBs
NCBI-GeneID:
121130723
NCBI-ProteinID:
XP_040582369
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MQKRRERIEKWRAEKRKRIAAGPSKEVVEKSSTSAKMWSLEDDTDDEEDESMPKSSKDEN
AEHKAKEEEEEEEEEEEEEDDPLESYMKEVNKEVRKLKGVKGTKTEKGSGGVVIMTGVAK
KRGAGGNAKRGELIEQNQDGLEYSSEDDEDNLDDAMSQLAKKGRKELTKIDHRDIAYQPF
VKNFYREVPELTKMTSDEVEVYRLELEGIKVKGKNAPKPIKNWTHAGVSQRILDLLKRNG
YEKPTPIQTQAIPIIMSGRDMIGIAKTGSGKTLAFLLPLFRHIMAQPELEEGDGPIAIIM
TPTRELCMQIGKEIKKFSKAIKGARSVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML
AANSGRVTNCRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEAL
ARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQE
HADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELV
LVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPEQGRYAGEVIKAMELSDAVVPAPL
KDLWEKYKIKSALEGKVIKTGSGGFGGSGFKFDETEATYTTEKKKFQKAAFGLQDSDDED
VEQEIEQQIEQLLNPKRTVKNVSASGATTTGIVMGVQIAGGVDIKSGNGASSGAADKLEL
AKRLASKINLKANAKNGSDTSNTTSSFMMGTQSKPIITAKTVADHIASKINAKLNYQPSE
DASPAEGTAFKKYEEELVINDFPQQARWKVASKEALAQISEYSDAGITVRGTYFPTGKPI
PEGERKLFLAIESTSELSVQKAKVEITRLLKEELLKIQTSGIQHINKGRYKVL
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacgacgagaaaggattgagaaatggagagctgaaaagaggaaaagaattgcc
gctggtccttccaaagaggtagttgaaaagagctccacatcagctaaaatgtggtctctc
gaagatgacacggatgatgaggaggatgaatctatgcctaagtcatccaaagatgaaaat
gctgaacacaaggcaaaggaagaggaagaggaggaggaggaggaagaagaagaagaagat
gatcctttggagtcctatatgaaggaagtcaacaaggaagttcgtaaattgaaaggtgta
aaaggaactaagacggaaaagggaagtgggggtgtagtaattatgacaggcgttgccaaa
aagaggggtgcggggggaaacgctaaaagaggagaattgattgaacagaaccaagatggt
ctagagtattccagtgaggatgatgaagataatcttgatgacgccatgagccaacttgct
aaaaaaggaagaaaagaacttactaaaattgatcatcgtgatatcgcgtatcaaccattt
gttaaaaacttttatcgggaagtccctgaacttacgaaaatgacttcagatgaagttgaa
gtttatagattggagttagaaggcattaaagtgaaagggaaaaatgctcctaagccaatt
aaaaattggacgcatgctggagtgagtcaacggattttagatcttttaaagcgtaatgga
tacgaaaaaccaactcctattcagactcaagcaattcctatcattatgagtggtagagat
atgattggcatcgctaaaacgggatcaggtaaaacattagccttccttcttcctttgttt
cgccatattatggcacagccagagttagaggaaggtgatggccccattgccatcattatg
acacccacgcgtgagctgtgtatgcaaattggtaaagaaataaagaaatttagtaaagca
attaaaggagctcgttctgtctgtgtttatggagggactggcatttccgagcaaattgca
gagttgaaacgaggcgcagaaattattgtgtgtactccaggacgaatgattgacatgttg
gcagcaaatagtgggcgagtcaccaattgtagaagaatcacttatgttgttttggacgaa
gcagatagaatgtttgacatggggttcgagcctcaagttagtcgtatcatcgataattgc
cgccctgataaacaaatggttatgtttagtgccactttccctcgtcaaatggaggctttg
gcccggagaattttgtgtaagcctgtggaagtgactgttggaggcagatccgttgtctgt
aaagatattgatcaatccgtttacgttttagaagaagaacataaatttttgaaattgctg
gaacttttagggcaacgaagttcagaaggactcatcatcatttttgtggacaaacaagaa
cacgcagattctcttcttaaagacctcatgagtgcttcctacacatcctgtgcatccctc
catggtggtgttgatcagtatgatcgagattcgattattacgaatttcaaaaatgggaag
gtaaagatattagttgctacgtctgttgctgctagaggtctggatgtgaaagagctcgta
cttgttgtgaattatgattgtccaaaccactatgaagactatgttcacagatgtggaaga
actggtcgcgccggaaatagtggatttgcagctacctttttaacaccagaacagggtcgt
tatgctggtgaagtgataaaagcgatggaactctctgatgctgtagttccggcgcctttg
aaggatttgtgggaaaagtataaaataaagtctgctttggagggtaaagtgattaaaact
ggatcaggaggttttggaggatccggcttcaagtttgacgaaacagaagcaacttacacg
actgaaaagaaaaagtttcaaaaagctgcatttggcttgcaagactcagacgatgaggat
gtagaacaagaaatcgaacaacaaattgagcaacttctcaaccctaagcgcaccgtaaaa
aatgtgtctgcttctggtgcaacaactactggcattgtcatgggtgttcaaatcgcaggg
ggtgttgatattaaatcaggtaatggagcctcaagtggcgcagcggataaacttgaatta
gctaagagattagcctccaaaataaatcttaaggcaaacgcaaagaatggatccgatacg
agcaatacaacgagctcctttatgatgggaacgcagagtaagcccattattactgcaaag
actgtagcagatcatattgcttccaaaatcaatgctaagctcaactaccagccttcggag
gatgcttctcctgctgaaggaaccgcgtttaagaaatacgaagaggaacttgtcatcaat
gatttcccacaacaagcaagatggaaggttgcctcaaaggaggcccttgcacaaataagt
gaatacagtgacgctggtattacggttcgcggtacctattttcccactgggaaacccata
cccgagggagaaagaaagcttttccttgctatcgaaagcactagtgaactctctgttcaa
aaggccaaagttgaaattacacgtcttttgaaagaggagctccttaaaatacaaacatct
gggattcaacacattaataaaggacggtataaggtcctttga
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