Lonchura striata domestica (Bengalese finch): 110470719
Help
Entry
110470719 CDS
T05897
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
lsr
Lonchura striata domestica (Bengalese finch)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Pur_ac_phosph_N
Interfer-bind
Fndc10
DUF1194
Motif
Other DBs
NCBI-GeneID:
110470719
NCBI-ProteinID:
XP_031361841
LinkDB
All DBs
Position
12:8984849..9011397
Genome browser
AA seq
2539 aa
AA seq
DB search
MGRSICILITDGKSQDDAEGPAAKLKSQGIKVFAVGIKNADRKELIRVASMPTDAFFFYV
GDFKLLDTLVPLITRRVCTTVGGTLQQPLCYPTDGPRHTGPSNLEIPERALDHLQIRWRA
ASGPITGYRVQYVPLTGLGQPIMAERQEVSVGPRETNTVLRGLRVGTEYLVTVTAQYANS
IGESVSGRARTQSRAGSVLDFRVVEAGPTFLRLAWQPGPEPLQGYSLSYAVQGAPQREEK
SLTASAQSATLSDLQPDTEYMVMLQPRYAQQPAVPATLTARTRHLVGVQHLTVHNVSAQS
MLLAWQSVSGATGYRLSWATLTGQDRHRVDLDAGQISHALVGLQPNTDYVVTVAPLFRQL
EGPAATVRQRTEAGSVQTLQTNILGPTSIQVLWTSARDARGYRLEWKRATGPEPPRTVSL
PSSTNTYQLMGLKPGTEYRITLYTLYDGGEVATPVTTFQTGVEAPVGAVSDLRLVEESGR
WVRLSWTGVPGATEYKVVVRNNQDGTERTRRIPGSQTGLELGDLREGVTYLVRVSALAGS
REGNAAMLTVRLKYPDVGSISDLRVMEAGPSQLRVTWRGLPGAGGYLLTWQGSDGLKKSR
FLPADPTTFTIEGLHANIVYTISVSAIVDGREGSPVTATGRIVPEQVGKVTQLEVQASRS
NVARVTWVGVPGATAYRVVWSRRDGGLENSRRVPGHTNSFDIPNLEGGVSYTVKVTALIG
NREGNPVSVVVTTPEAVPLRPVSGFQVTEASEHRLLLTWLPVAGSTGYRLFWRLAEGGPP
QSQQLPASSSSYALSGLEPGRHYHISITSLAGSQESEPATITAITTAPSHITSLRVTEVQ
RDSVTLTWTPVPGASGYVLSWSPPAAGGEKGRTLPSTASSQQVSGLRLGQRYTFTLRPLL
GSAPGAEVSVSERTVCRDALGDVVFLVHGIRNSSSGANAVRTLLSNTVSALGRLGPEGTQ
VALATYSSRSLPWLLLNRSSDLRTVLEQIRAMRYEDPSGNAIGAAISFARTYLLSPGAGR
RLGVPAVLVILADSPSGDDAITVARDVKAGGVQVLAVGMEGADREQLRRMVTSEDPRYIY
HGRDLAELEGELTDDLCTIISTRGEKGDRGEAGRHGLPGSPGPPGPQGPPGESAEGPGKK
GDRGMRGPMGLTGPKGEKGEPGEPRVITDGVRGLPGQKGEPGVPGEKGDRGERGLPGDPG
PRGPAGPPGLKGEKGDGTEGFPGPPGRPGDPGDRGPRGPPGEQGRKGDRGAPGELGETGE
KGDRGVPGPEGEKGEIGAPGHPGPSGREGAPGPTGPRGEKGDPGPPGRPAPSVAGVGEKG
DRGFPGPEGPPGPKGEAGDKGASGPPGLSIPGPAGPKGEQGDRGTVGLPGRSGPKGDPGE
PGEKGEPGRAGTPGQIGLRGKEGERGEKGDEGTPGEAGLPGKPGDRGPRGLPGYRGPPGE
KGDLGDPGPEGRNGSPGAPGSKGDRGDPGPPGPPGRTVDVGLGGVGGKGEKGDPGDPGED
GAKGARGDAGSPGLPGERGVEGPRGPPGTRGDPGDRGLPGEKGDRGSPGLDGRNGLEGKA
GPPGPAGLRGDPGKPGDPGRDGLPGLRGEQGPPGPMGPLGPPGVPGKAGEDGKPGLNGKN
GEDGTPGEDGRKGSPGLRGVAGPKGDPGEPGLPGEPNIERGLEGLGIKVLFPDSGLHFCP
DWWLSCLSQVSSLKELTGAYDGSSDSFPPAVERLRGQKGSRGDPGERGPPGREGSLGFPG
ERGPKGDKGDPGTPGPQGPMGRAVGERGPEGPPGQPGEPGKPGIPGVPGRAGELGESGRS
GEKGDRGEKGDRGEQGRDGLPGPPGPPGPKVDVVEGSLMGLPGERGPIGPKGAKGEGGLR
GERGEPGEKGRDGNPGLPGFPGVLGRPGESGKPGVPGRDGVPGKDGEAGVPGKMAIAGPP
GAKGEKGEPALLEGVLLGEPGSKGDRGLPGPKGEKGEPGKLGEPGDPGEDGAKGSSGAKG
EKGSVGVGARGPPGQDGPPGLKGDIGLPGLPGPPGLAGTAGMPGQPGLRGDNGQPGPPGP
PGERGLIGFPGRDGAAGPPGPVGPPGPAGIQGAPGLKGDKGAPGAGLPGARGERGDPGPR
GEDGRPGPEGDRGPAGVPGNRGERGDKGDLGAPGPKGDKGDTVVVEGPPGARGSKGEPGE
RGLKGTEGDKGDKGEQGMLGEKGTRGEQGEKGSMGFPGARGPSGQKGEAGAPGEPGEPGQ
PGRDGIPGARGEKGDMGPLGMRGLKGDRGMKGACGLNGDKGEKGEPGIPGRSGLPGRKGE
PGELGLSGPPGIPGKEGLMGPKGDRGFDGQQGAKGDQGEKGDRGAPGVMGGPGPRGSDGA
PGPPGPSGSVGPRGPEGMQGQKGERGPPGQSVPGARGMPGIPGERGEQGSPGTHGLRGEK
GEPGMTEEEIRAFVRQEMSQHCACGGHFPQHQDSREHSGGWGAQARSSFHPAQGVGRIVR
QEKEHDQTGSFSTQPFLAGSNHIVPVLKLSHAEEDEGQDRQIVLNNDDLTYDSMDGEEDD
YDEVPEMDSLEQPTVDALY
NT seq
7620 nt
NT seq
+upstream
nt +downstream
nt
atggggagaagtatctgcattctcatcacggatggcaagtcccaggatgatgctgagggg
ccggcagcgaaactgaagagccagggcatcaaggtctttgctgtgggtattaagaatgct
gaccgcaaggagctgatccgtgtggcctcgatgcctacggatgccttcttcttctatgtc
ggtgatttcaagctgctggacacgctggtgccactgataacacgaagggtgtgcacgact
gttgggggcaccctccaacagcccctgtgctaccccacagatgggccaaggcacactggc
ccctccaacctggagatcccagagcgggccctggaccatctgcagatccgctggagagca
gccagcggtcccatcactggctaccgggtgcagtacgtgccactgacggggctagggcag
cccatcatggctgagaggcaggaggtgagcgtggggccacgggagacaaacactgtgcta
cggggactgcgtgttgggacggagtacctggtcactgtcaccgcccagtacgccaacagc
atcggcgagtcagtgtctggccgagcacgaacccaaagccgtgctggctccgtgctggat
tttcgtgtggtggaggctggaccgacctttctgcggctggcctggcagcctggccccgag
cccctgcagggctacagcctcagctatgctgtgcaaggagcacctcaaagagaggagaag
agcctgacagccagcgcacagtcagccacactcagcgacctgcagcccgataccgagtac
atggtgatgctccagccccgctatgcacagcagcccgctgtccctgccaccctcaccgcc
cggacacggcacctggtgggcgtgcagcacttgactgtccacaacgtctcagcacagagc
atgctgctggcctggcagtctgtcagtggtgcgaccggctaccgcctctcctgggcaacc
ctcacagggcaggacaggcacagggtggacctggatgccgggcagatatcacatgcactg
gtggggctgcagcccaacaccgactatgtggtgacagtggccccactcttcaggcagctg
gaggggcccgcagccactgtgcggcagaggacagaggcaggttcagtccagacgctgcag
accaacatcctgggccccacctccatccaagtgctctggaccagtgcccgtgatgctcgt
ggctaccgtctggagtggaagagagccacaggaccagagccccccagaacagtgtctctc
cccagcagcaccaatacttaccagctgatggggctgaagccgggcaccgagtaccgcatc
accctctacacgctctatgatggtggggaggtggccacccctgtcaccacctttcagaca
ggcgtggaggcacccgtgggtgctgtgtcagacctgcggctggttgaggaatcgggcagg
tgggtacgcctgagctggaccggtgtccccggtgccaccgagtacaaagtggtggtgcgc
aacaaccaggatggcacggagaggacgaggcgcatcccaggcagccagacagggctggag
cttggtgacctccgggagggcgtcacctacctggtgcgtgtctcggcactggcaggcagc
cgggagggcaacgctgccatgcttaccgtgcgcctcaagtatccagatgtgggcagcatt
tcggatctgcgggtgatggaggccggtcccagccagctgcgggtcacctggcgagggctg
ccaggtgccgggggctacctgctgacgtggcaaggcagtgacggtctgaagaaatcccgc
ttcctccctgctgaccccaccaccttcaccatcgaggggctgcatgccaacattgtctac
accatcagtgtctcggccattgtggatggccgtgagggcagccctgtcactgccacggga
cggatagtgccagagcaggtggggaaggtgacccagctggaggtgcaggcatccaggagc
aatgttgcccgtgtcacttgggtcggtgtgccgggagccactgcctaccgtgtggtgtgg
agccgcagggacggaggtttggagaatagtcggcgagtccctggccacaccaactccttt
gacatccccaacctggagggaggcgtctcctacactgtgaaggtgacggcactcattggc
aaccgggaaggcaaccccgtctccgttgttgtcaccacccctgaggcagttcccctacgc
cctgtcagtggcttccaggtgaccgaggcctcagagcatcgcctgctcctgacctggctg
ccagtggctggcagcactgggtaccgtctgttctggcgcctggctgaaggggggcccccg
cagagccagcagctcccagccagctccagctcttatgccctgtcgggactggaaccaggc
cggcactaccatatcagcatcaccagcctggcaggcagccaggagagcgagccagccacc
atcactgccatcaccactgccccaagccacatcaccagcctgcgggtgacagaggtgcag
agggattcagtgactctcacctggaccccagtccctggtgcctctggctatgtcctctcc
tggagccctcctgcagctggtggggagaaggggcggacgctgcccagcactgccagctcc
cagcaggtctctgggctgcgcctgggccagcgctacaccttcaccctccggccactgctg
gggagcgcgccaggtgccgaggtgtccgtcagtgagcgcacagtctgcagggatgccctc
ggtgacgtggtctttctagtacacggcatccgcaacagctcctctggtgccaatgctgtc
cgcaccctcctctccaacaccgtgtctgccctggggcgcctgggccctgagggcacacag
gtggccctggccacgtacagctcccgcagcctaccctggctgctcctgaaccgctccagt
gacctgcgcaccgtgctggagcagatccgtgccatgcgctatgaggatcccagcggcaac
gccatcggggcagccatcagctttgccaggacctacctgctgagtcctggtgcagggcgc
cgtctcggggtgccagcagtgctggtgattctggctgacagcccctctggggatgatgcc
atcactgtggccagggacgtcaaggctgggggggtccaggtgctggcagtgggcatggag
ggggcagaccgggagcagctccggcgcatggtcaccagtgaggacccacggtacatctac
catggcagagacctggcagagctggagggagagctcaccgatgacctctgcaccatcatc
tccaccaggggcgagaagggagaccgcggtgaagcaggtcgccacgggcttcctggctct
ccaggaccaccagggccacagggtccaccaggagagagtgccgagggtccgggcaagaag
ggagacagggggatgcgtgggcccatgggacttactggcccaaagggggagaaaggtgaa
ccgggagagcccagggtgatcacggacggagtgcgggggctgccaggccagaagggggag
ccgggtgtgccgggagaaaagggtgaccgaggagaaaggggcctgcctggggaccccggg
cctcggggacctgctgggccccctggcctgaagggagagaagggtgatggcacagaaggt
ttcccagggccacctggccgccccggggacccaggagacaggggtcctcggggaccaccg
ggggagcagggcaggaagggagaccgtggggcaccaggcgagctgggagagactggcgag
aagggagaccgcggtgtgccgggcccagagggtgagaagggtgagataggagccccaggg
cacccagggccatcaggcagagagggagctccaggaccgactggcccccggggggagaag
ggcgatccaggaccacctggcagaccagctcccagcgtggctggtgttggagagaagggt
gacagaggtttcccaggaccagaaggtcctcctggccccaagggtgaagcaggagataaa
ggtgccagtggtccccctggcctgagcatcccagggccagctggccccaaaggcgagcag
ggcgatcggggtaccgttggcctcccaggcaggagtggcccaaagggtgacccaggagag
cccggggagaagggggagccgggccgagcaggcacccctgggcagatcgggctgcgaggc
aaggagggagagcgaggagagaaaggtgacgaaggcaccccgggtgaagcgggtctgcct
ggcaagcctggagacaggggtccccggggccttcctggctaccgtggcccccccggggag
aagggtgacttgggggacccaggacctgaaggcaggaatggcagccctggagcaccaggg
agcaagggtgaccgtggggacccagggcctcccggacccccaggacgaactgtcgatgtt
gggctcggaggagtggggggaaagggtgagaagggggaccctggggacccaggtgaggac
ggtgccaagggtgcccggggtgatgctggctcccctggactgcctggagagaggggtgtg
gagggcccccgtggcccccctggcacacggggtgaccctggggaccgaggcctgccggga
gagaagggggaccgtggctcaccagggctggatggccgcaatgggctggaaggcaaagct
gggcccccagggcctgctgggctgcggggggacccaggaaagcctggagatcctggccgg
gatgggctgcctggactgcgtggggagcagggaccacctggccccatgggtcccctggga
ccacctggcgtgcctggcaaagccggtgaggatggcaaacctggcctgaatggcaagaat
ggagaagatgggacaccaggagaggatgggaggaagggctccccaggcctccgtggggtg
gctggaccaaagggggacccaggggagcctggactgccaggggagccgaacattgaacgt
ggcctggaagggcttggcatcaaggtattatttcctgactctgggctccacttctgccct
gactggtggctctcttgtctctcccaggtttcgtccctgaaggagctcacgggtgcctat
gacgggagctcggactcgtttccgccggcggttgagcggctgcggggccagaagggcagt
cggggggatccaggagaaagggggcccccaggccgagagggctccttaggcttccctggc
gagcgaggacccaaaggtgacaagggagacccaggtacccccggcccccagggccccatg
ggccgggccgtgggtgagcggggtcccgagggcccgcctgggcagccaggggagcctggc
aagccaggcattcctggggtgccgggccgggctggggagctgggggaatccgggaggtcc
ggagagaagggtgaccgaggagagaagggcgaccgaggtgagcagggaagagatggcttg
cctggacccccagggcctccagggcccaaggtggacgtggtggagggcagcctgatgggt
ctcccaggtgaacgcggccccatcggacccaaaggagccaagggtgaaggtggcttgagg
ggtgaacgaggagagcctggtgagaagggcagggacggcaaccccggcttgccaggcttt
cctggcgtgctgggacgcccgggggagagcgggaagccaggcgtgccgggcagggatggc
gtgccagggaaggatggcgaggcaggagtgcctgggaagatggccatcgctggcccccct
ggagccaagggagagaagggtgagccggcactgctggagggtgtgctgctgggagagccc
ggctccaagggtgaccgaggcttgccaggccccaagggtgagaagggggagccaggaaag
cttggagagccaggagatcctggggaagacggagccaagggatcctctggagccaaaggg
gagaagggatcagtgggtgtcggtgcacggggaccaccaggacaggacgggcctccaggt
ttgaagggtgacattggcttgccaggattaccaggacccccaggcttagcaggcactgcc
gggatgccaggacagccaggcctgagaggggacaatggacagcctggccctccaggtcct
ccaggagagaggggcttgatcggctttccgggcagggatggtgccgctggaccaccagga
cctgtggggcccccagggccggccggcatacaaggggcccctggcctgaagggtgacaag
ggtgctccaggggctgggctgccaggagccagaggtgaacgtggtgacccaggaccacgg
ggtgaggatgggcgcccagggccagaaggggatcgtgggccagcaggcgtgccggggaac
cgcggggagcgtggggacaagggagacctcggggccccgggacccaaaggagacaagggc
gacactgtggtggtggaggggccgcctggagcacggggcagcaagggggagccgggagag
cgtggcctgaagggcacagaaggggacaagggggacaagggggagcaaggcatgctcgga
gagaagggcacgaggggtgaacaaggagagaaaggctccatgggtttccctggggcacgc
ggccctagcgggcagaagggagaggctggagcaccaggagagcctggggagccgggtcag
cctggccgtgacgggatccccggggcccggggggagaaaggggacatgggacccctgggc
atgcgtggcctcaagggtgaccggggcatgaaaggtgcctgtggcctcaacggggacaaa
ggcgagaagggagagccagggatcccagggcgctcaggactgccagggaggaaaggagag
ccgggagagctgggtctgtcaggaccaccaggcattcctggaaaagaagggctcatggga
cccaagggtgaccggggatttgatgggcagcagggagccaaaggagaccagggagagaaa
ggagaccggggtgccccaggtgttatgggtggccctggtccccggggcagtgacggtgct
cctggcccccctgggccctcagggagcgtcggccctcgaggtcctgagggcatgcagggc
cagaagggagagagaggcccccctgggcagtcagtgccgggtgcacgtggcatgcctggc
atccctggcgagagaggagagcagggcagtcctggcacccatgggctccgtggggagaag
ggagagccaggcatgacggaggaggagatccgtgccttcgtcaggcaggagatgagccag
cactgtgcctgtggtggccactttccacagcaccaggattcacgtgagcactcaggaggc
tggggggctcaagccaggagcagcttccaccctgcccagggagtaggaagaatcgtccgc
caggagaaagagcatgaccaaacagggtccttctccactcagccattccttgctggcagc
aatcacatagtccctgtgctgaagttgtcacacgctgaggaagatgaggggcaggacagg
cagatcgtgctcaacaatgacgacctcacatatgacagcatggatggagaggaggatgac
tatgatgaggtcccagagatggacagcttggagcagcccacagtggatgctctctactga
DBGET
integrated database retrieval system
