Lonchura striata domestica (Bengalese finch): 110471664
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Entry
110471664 CDS
T05897
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
lsr
Lonchura striata domestica (Bengalese finch)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
110471664
NCBI-ProteinID:
XP_021388143
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Position
2:complement(149270885..149489375)
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AA seq
1616 aa
AA seq
DB search
MDTFMVGSCRVPRLLVLLMLVLSGQRAEAQRAGCKSVHYDLVFLLDASSSVGKEDFEKVR
QWVSNLVETFEIGPDKTRVGVVRYSDRPSTEFDLGKYKTREEIKEAARKIQYFGGNTNTG
DALRYITTYSFSKEAGGRLSDRTVKKVAILLTDGRSQDFVLDPATAAHQAGIRIFAVGVG
EALKEELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTNG
GTDEIPGFDLMDSFSVKQIFGMKEDGIQSAYVRLGSFPVVQKTEDVFPQGLPDEYAFVTT
FKFRKASRKEDWYIWQIIDKYGIPQVSIRLDGENKALEYNAVGLTRDAVRVVFRSARVSD
LFDRSWHKIALSIQSKAVSLYIDCKLVQVLPIEERENIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDSRHAELETCCDIPSGPCQVTVLTEAPPLEVRPTVGSEQVGHLKIFNCSCPPG
QKGERGPLGFEGPKGQKGERGIPGLPGLRGEKGESGKAYGIGEKGEKGEEGFPGFPGLKG
DKGEKGSLGSPGPPGRDGAKGEAGEPGQPGAFGLPGPAGPKGSEGRQGPPGIKGYVGAPG
LQGERGEKGTRGDKGDRGLDGFPGKPGVEGKQGPPGSPGPPGASGTKGDKGEPGLPGLPG
TLVHTEGLKGEEGKPGPRGPQGQPGLPGPPGEPGLEGKPGVPGLPGQRGKKGEPGFPGIN
GLIGPQGPPGPPGIAGPPGPPGPPGLPGEIGVSGKIGPPGPAGLPGKDGLSGLPGLPGQK
GERGEKGEDGFPGKAGPKGEPGSRGQPGEQGEAGFPGLRGLPGPRGEKGDRGEKGRDGLP
AMKGERGEKGDTGSPGPPGLPGTTAFFTPHPRIPGEPGPKGDKGDQGMSGEPGLPGVPGE
QGVPGPPGAQGGKGEKGARGEAGAPGETGLSGPAGPPGPRGLPGNVGGPGVPGLPGKAGE
KGEKGDPGKEGKVGLPGPPGEPGRAGEPGLPGKGKDGERGERGPPGLPGPFGHKGERGAP
GLPGQPGDRGVPGVGLPGPPGPAGPPGDKGSLGPRGVPGIPGPQGPPGQDGVPGNPGERG
PPGKPGSPPRLTPEDINLLVKDVCSECPPGPPGLPGIPGFKGDKGLRGPPGRDGQDGKMG
IAGPRGPPGPPGLDGPKGAKGDRGMTGEVGEKGEQGHPGMPGFSGAPGNPGPPGSDGAPG
PIGPAGNPGDVGKDGPPGPQGPPGLPGLPGIAGNDGKDGKPGSLGEPGKPGEQGLPGREG
ARGLPGFKGQRGDTGPPGPRGEPGVTGPAGREGPPGKDGDPGPIGPQGPRGLRGQPGKNG
VPGSAGEPGPAGIPGPKGNKGEAGSPGLPGFIGPRGPPGEPGEKGSPGKEGTPGKQGAIG
SKGERGEPGIKGEKGLQGEKGPPGDPGIPGHKGHPGLMGPHGPPGDTGQVGPPGPPGQPG
FPGPRGESPSLETLRRLIQEELSKQLDAKLPYILAHIQPAQVKASHGRPGPPGPPGKEGL
PGRTGPPGEPGRPGQTGSEGPPGPIGPKGERGAKGEKGDTGIGQRGEMGPPGIPGLPGEP
GYAKDGMPGPPGPQGEAGVPGLAGPQGPPGANGQCDPSQCAYYASLAARPSNFKGP
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atggacacattcatggtggggagctgccgtgtgccccgtctcttggttcttctcatgttg
gtgctcagcgggcagagagctgaggcacaaagagcaggttgcaagagtgttcactacgac
cttgtcttcctcttggacgcctcctccagtgtcggaaaagaagattttgagaaagttcgt
cagtgggtgtctaatttggtggaaacctttgagattggcccagacaaaacccgtgtagga
gtggtgcgatacagcgatcgtccgagcacagagttcgacctgggaaagtacaaaacccgt
gaggagatcaaagaggctgcacgaaagatccagtattttgggggtaacacaaacactgga
gatgctctcaggtacatcaccacctacagtttttccaaagaagctggtgggagactgagc
gatcgaactgttaaaaaagtggctatccttttaactgatggaaggagccaggattttgtc
ttggatccagccactgcagcccatcaggctggtattaggatctttgctgtgggtgttgga
gaagccttaaaagaggaacttgatgagattgcttcagagcccaagtctgctcacgtgttt
catgtctctgattacaacgccatcgataaaattcgggggaagctgaggaggcgtctctgt
gagaatgtcctgtgtccaaatgtccacgtggaaggagaccggttcaagcacaccaatggg
ggcactgatgagatcccaggatttgacctgatggattcattcagcgtgaagcagattttt
ggaatgaaagaagatgggattcagagtgcctatgtacggcttggaagctttcctgttgtt
cagaagactgaggatgtatttccacaaggcctgcctgatgaatatgcctttgtaactacc
ttcaaattccggaaggcttccaggaaggaagactggtatatctggcagattattgacaag
tatggcataccacaggtgtcgatccggctggacggggagaacaaggctctggagtacaac
gccgtggggctcaccagggacgccgtcagggtggtgttccgcagcgcgcgggtcagcgac
ctgtttgaccgcagctggcacaaaatcgccctcagcatccagtccaaggctgtctcgctc
tacatcgactgcaagctggtgcaggtgctgcccattgaagagagggaaaacattgacatt
caaggaaagactgtgattggcaaacgcttgtatgacagtgttcccattgattttgatctt
cagaggatggtgatttactgtgattcccggcacgccgagctggagacctgctgcgacatt
ccctctggaccatgccaggtcacggtcctgacagaagcacctcccctggaagtgaggccc
actgttggcagtgagcaggttggacatctcaagattttcaactgctcctgtcctcctgga
caaaagggggagaggggtccacttggctttgaaggtcccaaaggtcaaaagggagaaaga
ggcatcccagggcttcctggacttcgaggagaaaaaggagagtcaggcaaagcctatggc
ataggagaaaaaggagaaaagggtgaagaaggctttcctggctttcctggactgaaaggg
gacaaaggagaaaaaggttccctgggctcacctggcccccctgggagggatggagcaaaa
ggagaagctggtgaaccaggacagccaggagcatttggattgcctgggccagcaggtcca
aagggatctgagggaagacagggtcctccaggcattaaaggctacgtaggtgcaccgggt
ctacaaggagaaagaggagaaaagggaacacgaggagacaagggagacagaggtctggat
ggattccctggaaagccaggtgtggaggggaaacagggccctcctggcagtcctggccct
cctggtgctagtgggaccaaaggagacaagggtgaaccaggacttccaggattgcctggc
actttagtgcatactgaaggcctaaaaggagaggaaggaaagcctgggccacgaggacca
caaggtcaacctggactacctggacctccaggagaacctggtctggaagggaagcctgga
gtccctggtttgccgggtcaaaggggtaaaaagggagaaccaggattcccaggaatcaat
ggtctgattggccctcagggacctccagggcccccagggattgctggacccccaggacca
cctgggccaccgggactgccaggagagattggagtttctggtaaaattggaccacctgga
ccagctgggctgcctggcaaagatggactcagtgggcttcccgggcttccaggtcaaaag
ggagaacgaggggaaaagggtgaggatggctttcctggaaaagctggccctaagggtgaa
ccagggagccgtggccaacctggtgagcagggtgaagcaggttttcctggtcttaggggc
ttaccaggaccaagaggagaaaaaggagaccggggagaaaaaggaagagacggtctccca
gcaatgaaaggtgaaagaggagaaaaaggtgacacaggttctcctggacccccaggttta
cctggaacaacagccttcttcaccccacaccccaggattcctggtgaacctggaccaaaa
ggagacaaaggagatcaaggaatgagtggagaacctggattacctggggtcccaggtgag
caaggtgtgccaggacctccaggagcacagggtggaaagggggagaaaggagcccgagga
gaggctggagcccctggagagactggtttgagtggaccagcagggcccccaggaccaaga
ggcttgccaggaaatgtgggtgggcctggagtccctggactcccaggaaaggcaggagaa
aagggggaaaagggtgatcctggaaaagaaggaaaagtgggtttacctgggccacctggt
gagccagggcgtgctggagagccaggtttgcctgggaagggtaaagatggagaaaggggg
gaaagaggaccaccaggcttgccaggaccctttggacataagggtgagaggggagctcct
ggcctccctggacagccaggagacagaggagtgccaggagttggcctgcctggaccccct
ggccctgcaggacccccaggagacaaagggtcactgggtccccgtggtgtgcctggtatc
cctggaccacaggggcctcctggccaggatggtgtacctggaaatccaggggaaagagga
cctcctggaaaacctggttccccaccccggctcactccagaggacataaatctcctggta
aaggatgtgtgcagtgagtgccctcctggcccaccaggactgccaggcatcccaggtttt
aagggggataaaggtctccgaggaccaccggggagagatggccaggatgggaaaatgggg
attgctggtcccagaggtcctccaggcccacctgggctcgatggcccaaagggtgctaaa
ggagaccgtggcatgactggggaagtaggagaaaaaggtgaacagggccaccctggaatg
cctggcttctcaggggctcctggaaaccctggtccacctggatcagatggtgcaccagga
ccaataggaccagcaggaaacccaggagacgtgggcaaagatggtcccccaggtccacag
ggcccaccagggctgcctggacttccaggcattgctgggaacgatggtaaagatggcaaa
ccaggatctctgggggagccgggaaaacctggagaacaagggctcccaggccgggagggt
gcccgaggattgccgggtttcaaaggacagagaggagatacaggtcccccaggtcctcgg
ggggagccaggtgtgacgggtcctgctggtcgtgaggggccaccagggaaggatggtgat
cctggtcccataggaccacagggccctcgaggactccgagggcagccgggcaagaatgga
gtgcctggatcagcaggagaacctggcccagctggtatcccaggtcccaaaggaaataaa
ggagaagcaggcagcccaggactccctggctttataggaccccgaggaccacctggagaa
ccaggagagaaaggttctcctggaaaagagggcacaccagggaaacagggtgcaattggc
tccaaaggagagaggggcgagcctggcatcaaaggtgaaaaaggccttcaaggagaaaag
ggtcctccaggtgatcctgggatacctggtcataagggccatccgggactgatgggtccc
cacggacctccaggagacactgggcaagttggacctcccggtcctccgggacagccagga
tttccaggaccaaggggagagtccccatctctagagactttgaggagactcatccaagag
gagttatccaagcagctagatgcaaagttaccctatatcctggctcatatacagcctgca
caggtaaaagcatcccatggcagaccaggacctcctggtccccctgggaaggaaggactc
ccaggaagaactggccctccaggagagcctggccggcctggacagactgggtctgaaggg
ccacctggaccaattggtcccaaaggagaaagaggagcaaagggtgagaaaggagacact
ggcattggtcaacgaggggaaatgggtcccccaggaattccaggcctcccaggggagcct
ggttatgccaaagatgggatgccaggacctcctggccctcaaggtgaagctggtgtgccg
ggtctggcaggtccccagggacccccgggagccaatggacagtgtgacccctctcagtgt
gcttactatgcaagcctggctgcccggccctccaatttcaaagggccttag
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