Lonchura striata domestica (Bengalese finch): 110479943
Help
Entry
110479943 CDS
T05897
Symbol
TRAF5
Name
(RefSeq) TNF receptor-associated factor 5 isoform X1
KO
K09849
TNF receptor-associated factor 5
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr04217
Necroptosis
lsr04621
NOD-like receptor signaling pathway
lsr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
110479943 (TRAF5)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
110479943 (TRAF5)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110479943 (TRAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110479943 (TRAF5)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
110479943 (TRAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
TRAF3_RING
zf-C3HC4_2
zf-TRAF_2
zf-C3HC4
zf-ACC
DUF4941
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-RING_6
SMC_ScpA
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
110479943
NCBI-ProteinID:
XP_021403221
LinkDB
All DBs
Position
3:complement(12763078..12785379)
Genome browser
AA seq
557 aa
AA seq
DB search
MACDEPAALSGIFTRQNSSSASSLDFEPDADYRFVESLEERYKCTYCHLVLRNPHQTGCG
HRFCQQCILALRELNAVPTCPVDKETIKMHEVFKDNCCKREVLNLHVFCKNFPDCSSKVI
LGRYQEHLQQCLFECMQCTNDGCRDRVLRKDLKEHLRQQCKFREERCQYCNTYVVFINIE
NHEKNDCPDYPVPCLQNCSQIILKKEIEKHHAVCPEAEVDCPYKQYGCHVKVKRGKLAEH
ENSALREHMLQILDKNSRLEEQISDLYKNLECKEIKIQQLADAIKKCEKEFRQYTQLFGN
NSNLMVSTQALASHLDKSARLESQVKQLIQMANQQQSKLDLQPLFETIENVRQKIALMET
YDQRLVVLEDQSSKHDLQINIHKAQLNKNEERFKLLEGTCYNGKLIWKITDYQKKKREAV
EGRVLSIASQPFYTSRCGYRLCARAYLNGDGSGKGTHISLYFVVMRGEFDSLLLWPFKQK
VTLMLLDQSGKKNHIVDVFRADPNSSSFKRPDGEMNIASGCPRFVPHTVLESTKNTYIRD
DTLFLKVVVDLTDLEEL
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcctgtgacgagcccgccgctctctcgggcatcttcacacgccagaactcctccagc
gccagctccctggacttcgagcccgacgccgactacaggtttgtggaaagcctggaggag
cggtacaagtgcacctactgccacctggtcctgcgcaacccccaccagacgggatgcggg
caccgcttctgccagcagtgcatccttgcgctgagagagttaaatgcagtacccacctgt
cctgttgacaaagaaacaataaaaatgcatgaggtattcaaagacaactgctgtaaaaga
gaagttctcaacttgcatgtgttctgcaaaaactttcctgattgcagttcaaaagtaatt
ctggggcgatatcaggagcatctgcagcagtgtctgtttgaatgcatgcaatgcactaat
gatggatgtcgggatcgagttcttcgcaaagacctgaaggagcacttgaggcagcagtgt
aaattccgagaagagaggtgccagtactgtaatacatatgtggtgttcattaacatagag
aatcatgagaaaaatgactgtcctgattatcctgtgccttgtctccaaaactgttcacaa
ataattctgaaaaaagagattgaaaagcaccatgctgtgtgtcccgaggcagaagtggac
tgtccatacaagcagtacggctgtcatgtaaaggttaaaagagggaaacttgctgaacat
gaaaacagtgccctgagggaacacatgctgcagattttagacaagaactcccggttggaa
gagcagatatctgacctgtataagaacctggaatgtaaagagatcaaaatccagcagcta
gcagatgccattaagaagtgtgagaaagaattcagacagtatacacaactgtttggtaac
aatagcaacttgatggtaagcactcaggctctggccagtcacctggataagtctgcacgc
ctggaatcacaagtgaaacagctaatacagatggcaaaccagcagcaaagtaaattagac
ctgcagcccctgtttgagacaattgaaaacgtgagacagaagattgccctgatggagacg
tacgaccagcgtttagttgttttagaagatcagtccagcaaacatgatctccagatcaat
attcacaaagcacagctcaataaaaatgaagaacgatttaagcttttggaaggcacgtgc
tacaatgggaaattaatctggaaaatcacagactaccagaagaagaaaagagaggcagtg
gaaggccgtgtgctgtccatagccagccagcccttctacaccagccgctgtgggtacagg
ttgtgtgccagagcctacctgaacggggacggctcgggaaagggaacgcacatctccctc
tacttcgtggtcatgaggggtgagtttgactcgctgctgctgtggcctttcaagcagaag
gttacacttatgcttctagaccaaagtgggaaaaaaaatcacatcgtggacgtctttaga
gctgaccccaacagcagcagtttcaaaaggccggatggagaaatgaatatcgcctccggc
tgtccgcgcttcgtgccgcacaccgtcctggagagcacaaagaacacctacatcagagat
gatactctctttttgaaagtggtcgtggatctaactgatctggaagaattgtga
DBGET
integrated database retrieval system
