Leptospira santarosai: LSS_11935
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Entry
LSS_11935 CDS
T03999
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lst
Leptospira santarosai
Pathway
lst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LSS_11935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lst03400
]
LSS_11935
Enzymes [BR:
lst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSS_11935
DNA repair and recombination proteins [BR:
lst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LSS_11935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DED
UB2H
MFD_D3
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
EKT86591
UniProt:
K8Y0K2
LinkDB
All DBs
Position
I:1384972..1388466
Genome browser
AA seq
1164 aa
AA seq
DB search
MKDLLRIIGEESFARFESFSPSKKNPARNIKTGPKKESGDFSITGNVYSVTEGSHSILVS
SLFRKLNRTIVVVSENNTAAEFLFRETLSFLPSSDLVYLPGQEVLPYEYLRYPSEMKRER
IKAIGKILNGEPSLVFTSVAGFLKTLPPARTMQGRAITLEKGKEIDLESLLIRLIDLGYK
RADVCETFGEFSLKGGILDIYSSYSQEPVRIDLFGEEIESIRTFDPDTQRSMIDLNRAVL
LPVDEYILSDEQKKEYQNLLKSSDSSLHIPEIPEVGYGIYYEELVPLVRENHGILSYFPE
PPVLLFPSPNSVNQRITHLEREYISLFEKRSREVLCAPPDKLLSFGEEFRVLSELIGISF
VGLPPRNGNDPVSCLREAPAFKGKIREVREKISELRTQGGWKIVLTSSFEAQTKRLQGLF
EKEGIVLLNEGTTEPVPFRLGKHESDAFLVLSELRNGFIFENQKILILSENDIFGREYKR
KTRFKKQNSKALQSFIDLKEGDPVVHIHHGVGRFLKIERTNAGGKERDFLKLEYAGGDSL
FVPLDQISLVQRYIGGTESPRLDSLGKSTWKRTKDRVQKAVETLAEDLVRMYSNRLKLQG
YAFPPDTIYQEEFEAEFEYEETPDQIDAIEAVKKDLESSVPMDRLVCGDVGYGKTEVAIR
AAFKVAMAGRQIMMLAPTTILALQHYNTFKGRFRNYPLRVELVSRFKTPAEIREILSDFS
LGKVDMIVGTHAILSSKLKPKNLGLLIIDEEQRFGVNHKEAIKKFKNLVDVLTLTATPIP
RTLHMALTGIRELSIIATPPKNRQSVETYVLEEDEDLIADAIRNEIQRDGQVFYLYNRVE
TIEQETKYLSEIVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNV
NTLFVKRADLFGLSQLYQIRGRVGRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELG
SGFKVAMRDLEIRGAGNLLGKEQSGDIMEVGFDLYVQMLEGAIAKIRGEEVAVEVRTSVT
LNTNFFIPETYISDTRQKIEFYKKFEGARNLEEIDEVYREMEERFGDPPEDAKTFILLEK
IRTLASNLGFESVAEMKDEIKMKSGSYFKGDHSKIIQLISAKIGLTLNPREPNVLIFQIG
KKTEKEKLDVLIFLLSEMLPSKKL
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcttcttcgaatcataggagaggaatcgtttgctcggtttgaatccttttcg
ccgtcaaaaaagaatccggctcggaacataaagaccggtcctaaaaaagaatccggggat
ttctcgattacgggtaacgtgtattccgtaacggagggaagtcactccatattggtttct
tctttatttcgaaaattgaatagaacaatcgtggtcgtttccgaaaataacaccgcggcg
gagtttttgtttagggaaactttgagttttctcccctcgtccgatctggtttatcttccc
ggtcaggaagtgcttccttacgaatatctgcgttatccttccgagatgaaacgggaaagg
atcaaagcgatcggaaagattctgaacggagaaccctcgctcgtttttacttccgttgcc
ggttttttaaaaacccttcctcccgcacgaacgatgcagggaagggcgatcacgttggaa
aaaggaaaggagatcgacctcgaaagtcttctcatccgtttgatcgacttgggttacaaa
cgtgcggacgtttgtgaaaccttcggagagttcagtctcaagggtggaattttagacatt
tactcctcgtattctcaggaaccggttcggatcgatcttttcggggaagagatcgaatcg
atccgaacctttgatccggatactcagagatcgatgatcgatttgaatagggccgttctt
cttcccgtggacgaatatattctttcggacgaacagaaaaaagaatatcagaatcttcta
aagtcttccgattcgtccctacatattccggaaattccggaagtgggttacggaatttat
tacgaagaactcgttcccttggtcagggagaatcacggaattctttcctattttccggag
cctcccgttttactctttccttccccgaactcggtgaaccaaagaataactcatcttgaa
agggaatacatttctctttttgaaaaacgttctcgggaggttctttgcgctcctcccgac
aaactactgtctttcggagaagaatttcgagttctttcggaattgatcggcatttcgttt
gtaggtcttcctcctcggaacggaaacgacccggtttcctgtttaagggaagctcccgcg
tttaagggtaagattcgggaagtccgcgagaaaatttcggaactccggacacaaggcggt
tggaagatcgttttgacttcttccttcgaagcgcagaccaaaagattgcagggacttttt
gaaaaggaaggaatcgttttgttaaacgaaggcacaaccgagccggttccctttcgactg
ggaaaacacgagtcggatgcgttcctcgttttgtccgaactcagaaacggttttatattc
gaaaatcagaaaattctaattctatccgaaaacgacattttcggaagggaatacaaacgt
aaaacccgctttaaaaagcagaatagcaaagcccttcagagtttcatcgatttgaaagag
ggagatcccgtggtccatatccaccacggggtcggtagatttttaaaaatcgaaaggacc
aacgccgggggaaaagaaagggattttctcaaattggaatacgcgggcggagattctttg
tttgttcctttggatcagatctctctggttcagagatacataggcggtaccgaatctccc
cgtttggatagtctcggtaaaagtacttggaaaagaacgaaggatagggttcagaaagcc
gtagaaacccttgcggaggatctggttcggatgtattccaatcgactcaaactccaaggt
tacgcgtttcctccggacacgatctatcaggaggaattcgaggcggagttcgaatacgag
gaaactccggatcagatcgatgcgatagaagcggtcaaaaaagacctggagtcttccgtt
ccgatggaccgcctcgtttgcggggacgtgggttacggtaaaacggaggtcgcaatccgc
gcggcgtttaaggtggcgatggcgggacgtcagatcatgatgctcgcgcccactacgatt
cttgcattacaacattataatacgtttaagggtcgatttcggaattatcctcttagagtc
gagctcgtttcccgttttaaaactcccgccgaaatccgcgagattctttccgactttagt
ctcggtaaggtcgatatgatcgtcggtacacacgccattctttcctccaaacttaaaccg
aagaatctggggcttttgatcatagacgaggaacaaagattcggagtcaaccataaggaa
gcgattaaaaagttcaaaaatctcgtggatgttttgactctgaccgcgactccgattccg
agaactctccacatggcgttgaccggaattcgagaactttccatcatcgcaaccccgcct
aagaatcgtcagtcggttgaaacctacgttctcgaagaggacgaggatttgattgcggac
gcgatccgaaacgaaatccaaagggacggccaggtgttttatctttacaatcgagtcgag
acgatcgaacaggaaacgaaatatttaagcgaaatcgttcccgaagtttccatcgggatt
cttcacggacaaatgacggaagacgaaatcgaagaaactcttttggatttttacaaccgt
aaatacgacattctagtcacgactacgatcatagaatccggtatcgatatgcccaacgtg
aacactcttttcgtaaaacgggcggatcttttcggtctttcccaattgtatcagatccga
ggtagggtgggtaggagcgatcgaaaggcttttgcgtatttgcttcttcccaaagatcga
gttgtaacggagcaggccgaaaaaagactgaatacgatctacgaatatcaggagttgggt
tccggttttaaggtggcgatgcgggatctcgaaattcgcggagccggaaacttgctcgga
aaggaacaatccggagacatcatggaagtcggattcgatttgtacgttcaaatgctcgaa
ggggcgatcgcaaaaatcaggggagaagaggtcgcggtggaagtcagaacttccgtgact
ctcaatacgaatttttttatcccggaaacttacatttcggacacaagacagaaaatagaa
ttttataaaaaattcgaaggcgcgagaaatctcgaagagatagacgaagtttatcgagag
atggaggagcgtttcggagatcctcccgaggatgcaaaaacttttatcctgttggaaaag
attcgaactcttgcatctaatttgggctttgaatccgtagccgaaatgaaggatgaaatt
aaaatgaaatcaggttcttattttaaaggagatcattcaaaaatcatccaactgatttcg
gctaaaatcggacttactctcaatcctagagaaccgaatgtactgatctttcagatcgga
aaaaaaacggagaaagaaaagctcgacgttttgatctttcttctttctgaaatgttacct
tccaaaaaattatag
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