Lactuca sativa (garden lettuce): 111876172
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Entry
111876172 CDS
T05352
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111876172
09123 Folding, sorting and degradation
03018 RNA degradation
111876172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111876172
03041 Spliceosome [BR:
lsv03041
]
111876172
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111876172
mRNA cycle factors
Stress granule specific factors
111876172
Spliceosome [BR:
lsv03041
]
Complex C
Other components
Complex C specific factors
111876172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
RRM_7
MARF1_RRM1
SET_assoc
Motif
Other DBs
NCBI-GeneID:
111876172
NCBI-ProteinID:
XP_023728465
LinkDB
All DBs
Position
1:complement(27298765..27302317)
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AA seq
700 aa
AA seq
DB search
MAQIQVQPLTVSGPNGVASAATTTTTPNASGVAAAAAVAGAAVAVAAAGANQSFVTTSLY
VGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPPDAARAIDVLNF
TAVNGKAIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSSFGNILSCKIAVDG
TGQSKGYGFVQFDTEEAAQTAIDKLNGMLMNDKQVYVGHFLRKQERDSSLSRTKFNNVYV
KNLSESTTDEDLKQTFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAANAVEALNGKK
FDDKEWYVGKAQKKSEREMELKSRFEQTAKEAVDKFQGVNLYVKNLDDTIDDDKLKEIFA
EYGTITSCKVMRDPSGISRGSGFVAFSSTEEASRALSEMNGKMIVSKPLYVALAQRKEER
RARLQAQFSQMRPVAMAPSMMAPRMPMYPPGGPGMGQQLFYGQAPPAIIPPQAGFGYQQQ
LVPGMRPGGGPMPNFFVPVVQQGQQGQRMGGRRGAGPVQQNQQPVPMMQQQMVPRGGGRM
YRYPGRNMGDGNMGGGGGGMLPVPYDMGGILPRGGGGGGDGAATGGIQQQPPVPITALAS
ALANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVA
EAMDVLRNVQQQHQAANNNTNAPPPAAQLASLSLNENLVS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggtacagcctcttacggtatctggaccgaatggtgtggcgtctgcg
gcaacaacgacgacgacgcccaatgctagcggtgtagctgctgctgcggctgttgctggc
gctgcggtggcggtagcggcagccggcgctaatcagtcgtttgtcacgacgtcgctttac
gttggggaccttgaattcaatgttactgattcgcagctgtacgatctgtttaaccaagtt
gggcaggttgtctctgttagggtttgtagggatttgtccactcggcgatcccttggttat
ggttacgttaactacagcaaccctcctgatgctgcaagggctattgatgtactgaatttc
acagctgtaaatggaaaggcgattcgcatcatgtattctcatagagacccaagcattcgt
aaaagtggaactgcaaatatatttattaagaacttggacaagtccattgacaacaaagcc
cttcacgacaccttttcaagctttggtaacattctgtcttgcaagattgcagttgatggc
acaggccaatcaaaaggctatggctttgtgcaatttgacactgaagaagctgctcaaact
gcaattgataagctaaatggcatgctgatgaatgacaaacaagtctatgttggtcatttt
cttcgtaagcaagaacgtgactcttctttaagcaggacaaagttcaataacgtgtacgtg
aagaatctttctgaatccacaactgatgaagatctgaaacagacatttggtgaatatgga
acaataacaagtgctgttgttatgagagatggagatgggaaatcaaagtgttttggattt
gtcaactttgagaatgcagatgatgctgctaatgctgttgaggctttaaatgggaagaaa
tttgatgataaggagtggtatgttggaaaggctcagaagaaatccgaaagagaaatggaa
ctcaagagccgatttgaacagactgctaaagaagctgttgataagtttcaaggtgttaat
ttatatgtcaagaatcttgatgacactatcgatgatgataagcttaaggaaattttcgct
gagtatggtactatcacttcctgcaaggttatgcgtgatcctagcggaatcagtagaggt
tctggttttgttgccttttcgtctactgaagaggcttctcgagctcttagtgagatgaat
gggaaaatgattgttagcaaaccactttatgttgcacttgctcaacgtaaggaagaaaga
agggcaaggcttcaggctcaattctcacaaatgaggccagttgcaatggcaccatcaatg
atggcgccacgtatgccaatgtatcctccaggtggaccgggaatggggcagcagctattt
tatgggcaggcgccccctgctataattcctccacaggctggattcggttaccagcagcag
ctggtgcccggaatgaggccgggcgggggtcccatgccaaacttctttgttccagttgtg
caacaaggtcaacaaggtcaacgcatgggtggaagacgtggagcaggtcctgtgcaacaa
aatcagcagcctgtcccaatgatgcaacagcagatggttccaagagggggtggacgaatg
tatcgttacccgggtaggaacatgggagatggaaacatgggaggaggaggaggagggatg
cttccggtgccttacgacatgggcggcatacttccacgtggaggtggaggaggaggagat
ggtgctgctaccggcggcatacagcagcagccaccagtgcctattacagcgttggcttct
gctcttgcgaatgcaccacctgagcagcaaagaacgatgttgggggagagtttgtatccg
ttggtggaccagttggagcatgagcatgctgctaaagtgacagggatgctgctggagatg
gatcagacagaagtgttgcatttgttggagtcgccagaagctttgaaggctaaggttgct
gaggctatggacgttcttaggaatgtccagcagcagcatcaagctgcaaataacaacacc
aacgcgcctcctcctgctgctcagcttgcttccctctctctcaatgagaatcttgtttct
tga
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