Lactuca sativa (garden lettuce): 111886023 Help Entry 111886023         CDS       T05352                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism lsv  Lactuca sativa (garden lettuce) Pathway lsv03030   DNA replication lsv03410   Base excision repair lsv03420   Nucleotide excision repair lsv03430   Mismatch repair Brite KEGG Orthology (KO) [BR:lsv00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     111886023    03410 Base excision repair     111886023    03420 Nucleotide excision repair     111886023    03430 Mismatch repair     111886023  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:lsv03032]     111886023    03400 DNA repair and recombination proteins [BR:lsv03400]     111886023 Enzymes [BR:lsv01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      111886023     6.5.1.6  DNA ligase (ATP or NAD+)      111886023     6.5.1.7  DNA ligase (ATP, ADP or GTP)      111886023 DNA replication proteins [BR:lsv03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     111886023  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      111886023 DNA repair and recombination proteins [BR:lsv03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      111886023    NER (nucleotide excision repair)     Other NER factors      111886023    MMR (mismatch excision repair)     Other MMR factors      111886023 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36 Presenilin Motif Other DBs NCBI-GeneID:  111886023 NCBI-ProteinID:  XP_023738030 LinkDB All DBs Position 1:77791929..77796891 Genome browser AA seq 844 aa AA seqDB search MLSLRSCCYSVTHTNTITTAFSHPIRHSLLKLSSSSSLTFPLFFLSNKMSSSRPSAFDAL MSNARAAAAKKKTTESSASPKKRKTLDSKPPISSTPISEAKVAEASPKPDKPLDTNTKKK TQVSSSSPKKRKTLDSKPPINSTPVTEAKVAEVSPKPEKTSDTNQSKDETVSNEIIEAKP NLDVAPSKEENASKKPRPIDVDESMIQLKKKPANFKPEKAAFWGEGERVPFLFLCRVFDA ISKESGRILITEIVCNMLRTVIKTTPDDLVGVVYLLANRIAPAHEGLELGIGDASIIKAL AEACGAKEAHIKKQYKELGDLGLVAKASRSSQPLMRKPQPLTVSKVFDTFRVIAKESGKD SQDKKKNHIKGLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTALGYAIVYTENGESPSK HSDSPLEEAAKIVKQVYSVIPVYDKIVPALLSDTVWNLPKTCCFSPGVPVGPMLAKPTKG VSEILDKFQDMEFTCEYKYDGERAQIHYLEDGTVQIYSRNAERNTEKFPDVVVAASRVKK PSVTSFVLDCEIVAYDRKKQKILPFQILSTRARKNVVMSDIKVDVCIYAFDLLYLNGQQL LQEQLSVRRERLYESFNEEPGFFQLATAITSNDLEKIQTFLDAAVNGSCEGLIIKTLNKD ATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRVGVYGAFLLACYDNNKDEY QTICKIGTGFSEAMLEERSTSLRSKVIPKPKSYYRYADSINPDVWFEATEVWEVKAADLT ISPVYCAAIGAVDPNKGISLRFPRLLRVREDKGPEDASSSDMVADMYNAQKHTQGNNQDD NDDE NT seq 2535 nt NT seq  +upstreamnt  +downstreamnt atgttatcgctccggtcatgttgttatagtgtgactcacaccaacaccataaccaccgca ttctctcaccctattagacattctcttcttaaattgtcgtcgtcatcatccctaacattt cctctcttctttctttcgaacaaaatgtcatcatctcgtccctccgccttcgatgcactc atgtccaatgctcgtgcggctgccgcgaagaagaaaaccacggaatcttccgcttcccct aagaaacgcaaaaccctagattcaaaacccccaattagttcgacacctattagcgaagct aaagttgcagaagcctcaccaaagccggataaaccattggatacgaacacaaagaagaaa acccaggtgtcttcctcgtcccccaagaaacgcaaaaccctagattcaaaacccccaatt aattcgaccccagtcaccgaagctaaagttgcagaagtctcaccaaaacccgagaaaaca tcggacacgaatcaaagtaaagacgaaactgtctcaaatgagattatagaagctaagcca aaccttgatgttgctccatcaaaggaagaaaatgcatctaaaaaaccacggccgattgat gttgatgagagtatgattcaattgaagaagaaaccggcaaacttcaaacccgaaaaggct gcgttctggggcgaaggagaaagggtgccgttcctatttctctgtcgggtttttgacgca atctccaaagaatctggtcggattctgattacagaaatcgtctgtaacatgctgagaact gtaatcaagacaacacctgacgatttagttggggttgtatacctcttggctaatagaatc gccccagctcacgaaggattagagcttggaatcggtgatgcttccatcatcaaagctctc gctgaagcttgtggtgcaaaagaagcacacatcaaaaagcaatacaaggaactgggagac ttgggccttgttgccaaagcaagccgctcttcccaacctctgatgcgtaaacctcaacct ttgacagtttcgaaagtttttgatacattcagggttattgccaaggaatctgggaaggat agtcaagataagaagaagaatcatatcaagggacttcttgttgcagcaactgactgtgaa cctcaatatttgatacgtttacttcagacaaaattgcgaattggtttagctgaacaaaca ctcttaactgcattggggtatgctattgtgtatactgaaaatggtgaatcaccttcaaag cactcagattcaccattagaagaggctgcaaagattgtgaaacaagtgtactctgtaatt cctgtatatgacaaaattgtccctgctcttctctctgatactgtatggaatctaccaaaa acatgttgcttttcacctggtgttccagtgggacccatgcttgctaaacctactaaagga gtatctgaaattttggataaatttcaagatatggagttcacttgtgaatacaaatatgat ggagaacgggcccagatacattatttggaagatggcacagttcaaatatacagcagaaat gctgaaagaaatactgaaaagtttcctgatgttgtggttgctgcttcaagagttaaaaaa ccaagtgtgacatcatttgttttggactgtgaaatcgttgcatatgatcgcaagaaacaa aaaattctcccattccagattttaagcacacgtgctcgaaaaaacgttgtaatgagtgac atcaaagtggatgtatgcatttacgcatttgatttgttgtatttgaatggacaacaactt ttacaagaacaacttagtgttcgtagagagcgtctatatgaatccttcaatgaagaacct ggatttttccagcttgcaacagccataacttcaaatgatctggaaaaaattcaaaccttt ttagatgctgctgtcaatggcagttgtgagggtttgattatcaaaacgttaaataaagat gcgacatatgagcctgcaaagcgatcaaataactggctcaagttaaagaaagactatatg gacagtattggtgactcattggatttagtgccaattgctgcttttcatggaagaggaaaa cgtgtaggtgtatatggtgcttttcttcttgcttgttatgacaacaataaggatgaatat caaactatttgcaaaattgggactggtttttcagaagccatgcttgaagaaaggtctaca agtcttcgttctaaagtcatcccaaaacccaagtcatactaccgatatgcagattctata aatccagatgtgtggtttgaggcaactgaggtttgggaggtcaaagctgcagatttgacc atcagccctgtttattgtgctgcaattggtgcagttgaccctaataagggtatttcactg agattcccacgtttacttcgtgttagagaagacaagggtccggaggatgcttcatcttca gatatggttgctgatatgtataatgctcagaaacatacacaaggtaacaatcaagatgat aacgatgatgagtga

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