Lactuca sativa (garden lettuce): 111892147
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Entry
111892147 CDS
T05352
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111892147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111892147
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111892147
mRNA degradation factors
5'-3' decay
Decapping complex
111892147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
111892147
NCBI-ProteinID:
XP_023743983
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All DBs
Position
6:complement(52286496..52291290)
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AA seq
369 aa
AA seq
DB search
MAQSGKLMPNLDQNSTKILNLTVLQRMDPYIEEILITAAHVTFYEFNVDLNQWSRKDVEG
SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEFELQIPYLLYRNAAQEVNGIWFYNS
RECEDVANLFTRILGAYSKVPPKQKVNKSEFEELEAVPTSAVIEGPLEPGLTNTRSTDVP
EDSSFVNFFSTAMNLGHNPPNQVVNSIPTYHNSTPIPLPSRDTPSPIPNNPPPPPPPLQN
PSSDNSNSDHPVNNNTNNNHVTNLIKPLSFFTPSSSSAPSPSPLMRQPSSSVPVSALQPP
LNVQRNVGIPLLQPFPPPTPPPSLTPTSNSAPFYGPLTREKVRDALVMLSQDNQFIDMFY
QALLKVHQS
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaagtgggaaattaatgcccaatctcgatcaaaacagtacaaagatccttaat
cttactgtccttcagaggatggatccttatatcgaagagatcttgatcactgccgctcac
gtcaccttctacgagttcaacgtcgacctaaatcaatggagtcgcaaggatgttgaaggg
tctctctttgttgttaagaggaacactcaaccaaggttccagtttatagtaatgaatagg
cgaaatacagaaaaccttgtggaaaatctgctaggagattttgaatttgaacttcaaatt
ccatatttgttatatcgaaatgctgctcaagaagtcaatggaatttggttctacaattca
cgtgagtgtgaagatgttgcaaatttatttaccaggatacttggtgcatattcaaaggtt
ccccccaagcagaaggtgaacaaaagtgaatttgaggaacttgaagctgtacctacatct
gctgtaattgaaggaccattggaaccaggtttgaccaacactcggtcaaccgatgtacct
gaggattcttcatttgtcaacttctttagtacggctatgaatttgggacacaatcctcca
aatcaagtagtcaattccatcccgacttaccacaattccacaccaattccattaccatct
cgtgacaccccttcccccattccaaacaatccaccaccaccaccaccaccattacagaat
ccctcatctgacaactccaattccgaccaccctgtcaacaataacaccaacaacaaccat
gtaactaatcttataaaacctctttctttcttcacaccttcttcttcttctgcgccttca
ccttcaccattaatgagacaaccttcttcatctgtccctgtttccgcccttcaaccgcct
ctcaatgtacaaagaaacgttggaatcccgttgcttcaaccgtttccgcctcccactcca
ccgccatcactgactccgacttccaattccgccccgttttatggaccgctgaccagggaa
aaagttcgagatgcacttgtaatgctttcacaggataaccaattcattgacatgttctac
caagcattacttaaagtacatcaatcataa
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