Lactuca sativa (garden lettuce): 111896094
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Entry
111896094 CDS
T05352
Name
(RefSeq) serine/arginine-rich-splicing factor SR34 isoform X2
KO
K12890
serine/arginine-rich splicing factor 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111896094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111896094
Spliceosome [BR:
lsv03041
]
Common components
Common spliceosomal components
SR proteins
111896094
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
111896094
NCBI-ProteinID:
XP_023747881
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Position
8:81672024..81675530
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AA seq
284 aa
AA seq
DB search
MSRSSRTIYVGNLPGDIREREVEDLFYKYGQIAHIDLKIPPRPPGYAFVEFEEARDAEDA
IRGRDGYDFDGHRLRVELAHGGRGNSSSTDRHGGYGSGRGGGGGGGGRSGGVSRRSDYRV
MVTGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMKYAIRKLDDSEF
RNAFSRGYIRVKEYDSSHSRSRSRSRSKSRSYSRSRSRSISKSPKAKAKASRSASPRSGS
KSRSPSRSRSPLPSRPKRVSKSPKRRSPSKSPSRSRSRSKSLSR
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctctagcagaactatatatgttggcaatcttcctggggatattcgcgagcga
gaagtggaagatttgttttacaagtatggtcaaatagcccatattgatttgaaaattcca
ccaaggcctccaggttatgcttttgtagagtttgaagaggctcgtgatgctgaagatgct
attcgtggtcgcgatggctatgattttgatgggcacagattaagggtggaactcgcccat
ggtggtcgtggcaactcatcttctacagaccgtcatggcggttatggcagtggtcgcggt
ggtggtggtggtggtggtggtcgcagtggtggagtttctagacgctctgattacagagtt
atggtgactggcttaccctcttctgcatcatggcaagacctaaaggatcacatgcgcaga
gctggagatgtttgtttctcccaagtttttagggagggtgggggtactacagggattgtg
gactacacaaactatgatgacatgaaatatgctatacggaaattggatgactctgagttt
cgaaacgccttctctcgtggatacatacgagtgaaggaatatgattcgagccattctagg
agccggagtcgcagtagaagcaaaagcaggagctacagcaggagtcgcagcaggagcata
agcaagtccccgaaagcaaaagcaaaagcttcaagatctgcttcacctcgttctggatct
aaatcaagatctccttcaagatccagatctcccctaccttctcgccctaagcgggtaagt
aaaagcccaaaaagacgcagtcctagcaagagccccagcagaagcagaagcaggagcaag
agtttatctcggtaa
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