Lutibacter profundi: Lupro_07835
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Entry
Lupro_07835 CDS
T04235
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lut
Lutibacter profundi
Pathway
lut03410
Base excision repair
lut03430
Mismatch repair
lut03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lupro_07835
03430 Mismatch repair
Lupro_07835
03440 Homologous recombination
Lupro_07835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lut03400
]
Lupro_07835
DNA repair and recombination proteins [BR:
lut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Lupro_07835
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Lupro_07835
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lupro_07835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
LsmAD
Motif
Other DBs
NCBI-ProteinID:
AMC11168
UniProt:
A0A0X8G7M4
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Position
complement(1768357..1770054)
Genome browser
AA seq
565 aa
AA seq
DB search
MRWKLKPNPNPQIISKLAQELSIDNTLAKLLVQRGLENYNQAKAFFRPNLNDLHNPFLMK
DMDLAVDRIEKAILKGENILVYGDYDVDGTTAVSLLSSYLRKIYPNIATYIPDRYNEGYG
ISFQGIDFAEDNAVSLIIALDCGIKAIDKVTYAKEKGIDFIICDHHRPGNKIPEAVAVLD
PKRSDCGYPFKELCGCGVGFKLIQALATERNQTIGDLVEYLDLVATAIAADIVPIIGENR
ILAYFGLQVINTNPRNGIKALLQQVKKKQFTITDVVFIIAPRINAAGRIKHGNYAVELLT
EMDLDTAIKFAAEIEKNNNDRKELDKKITKEALQQIEDTNEQQNYSTVVYAKNWHKGVIG
IVASRLIETYYRPTLVFTKSGNKLAASARSVKGFDVYDALEQCAEFIEQFGGHKYAAGLT
LEEKNYQNFKAKFEEVVKNTLPDELREPEISIDAEISLLEVTPKFYRILKQLEPFGPQNM
KPVFLANGLRDNGYGKKVGVDETHLKLNIFEGSNQKTFNAIGFNMGNKHSLIKNGKPFKA
VFNIDENHWNGNTSLQLLLKDLKEE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggaaattaaaaccaaacccaaaccctcaaatcatatcaaaacttgcacaagaa
ttatcaatagataatacattggctaaattacttgtgcaacgcggcttggaaaactacaat
caagccaaagccttttttcgccctaatttaaatgatttacacaatccatttttaatgaaa
gatatggatttggctgtggatcgtattgaaaaagcaatactaaaaggtgaaaacatttta
gtttacggtgattacgatgttgatggtacaacagccgtttcattattgtcttcttattta
agaaaaatttaccccaacattgccacctatattcctgacagatataatgaaggctacggt
atttcatttcaaggaattgattttgctgaagacaatgcagtttcattaattattgcgtta
gactgtggaataaaagcaatagataaagttacttacgctaaagaaaaaggaatagatttt
attatttgtgaccatcatagacctggaaataaaattcctgaagctgttgcagttttagac
ccaaaacgttcagactgtggatacccatttaaggaattatgtggttgtggcgttggattt
aaattaattcaagcgttggcaacagaaagaaatcaaacaataggagatttggttgaatat
ttagatttggtagctaccgccattgcagcagatattgttccaataataggagaaaataga
attttggcatattttgggttacaagttataaataccaatccaagaaatggaataaaggca
ttgcttcaacaagtaaaaaagaaacaatttacaattacagatgttgtttttattattgct
ccacgaattaatgctgctggaagaattaaacatggaaattatgcggtggaattattaacg
gaaatggatttagatacggcaataaaatttgctgctgaaattgaaaagaataataatgac
agaaaagaactggataaaaaaataaccaaagaagctttacaacaaatagaagatactaat
gagcaacagaattactcaacagttgtatatgcaaaaaattggcataaaggtgtaataggt
attgtggcttctaggttaattgaaacatactaccgaccaacattagtttttacaaaaagc
ggcaataaattagcggcttctgcacgctcagttaaaggttttgatgtttatgatgcgtta
gagcaatgtgctgaatttattgagcaatttggcggacataaatatgcagcaggattaaca
ttggaagaaaaaaactatcaaaattttaaagcaaaatttgaagaagttgtaaaaaataca
ctacctgatgaattaagagaaccagaaatttcaattgatgctgaaataagtttattagaa
gtaacaccaaaattttatcgtattttaaaacaacttgaaccttttgggcctcaaaatatg
aaacctgtttttttagcaaatgggttgcgtgataatggctacggtaaaaaagtaggtgtt
gatgaaactcatttaaaattaaatatttttgaaggttcaaaccaaaaaacatttaatgct
ataggttttaatatgggaaataaacattcgttgataaaaaacggaaagccttttaaagct
gtttttaatattgatgaaaaccattggaatggaaatacgtcattacaattactgctaaaa
gatttaaaagaggaataa
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