Lipotes vexillifer (Yangtze River dolphin): 103071221
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Entry
103071221 CDS
T03090
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain-like
KO
K24357
collagen type XX alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103071221
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
Laminin_G_2
DUF4959
Motif
Other DBs
NCBI-GeneID:
103071221
NCBI-ProteinID:
XP_007462337
UniProt:
A0A340XQ67
LinkDB
All DBs
Position
Unknown
AA seq
1461 aa
AA seq
DB search
MGCVNLVVTLGSAAAQLCLPLRGLGGDIRAGWQLPCWLSARVSASSRLRLAVLPEDRLQM
KWRESEGSSLGYLVQVKPRAGDLEQEVMLTTKTPKATVGGLSPSKGYTLQIFXLTGSGNV
LLARREFVIKDLKSSSASRSSRRPLGAALEPSPSHEGSPDLEPPVALSPSQDLPTPAGPQ
FRCTSPTPVDMIFLVDGSWSIGHSHFQQVKDFLASIIEPFEIGPDKVQVGLTQYSGDPQT
EWDLNALGTKEEVLAAVRGLQYRGGNTFTGLALTHVLEQNLKPVAGLRPEAAKLVILVTD
GKSQDDARTAGHMLKGLGIDVFAVGVKNADDAELRLLASQPLDITVHSVQDFPQLGSLAG
LLSRLVCQKVQGRRLHSGPVTPAAAAPALDPLSAPTGLVLTRVTSSSIHLSWTPAPRPPL
KYLIVLRPSTGGAPREVVVEAPASSAELHSLTSSMEYLVSVLPVLKAGVGEGLQGLVTTA
PLPPPQVLTLATVMPRAIHLTWQPSAGATQYLVQCSPTSPKGKEEGREVRVGQPEALLDG
LAPGRDYEVWVRSLRGAEISEAQSIRARTPALAAPRHLSFSDVSHDSARVSWEGTARPVR
LFRVSYVSSKGGHSGQTEAPGSATSVTLGPLSSSTAYTVRVTCLYAGGSSSTLTGRLTTR
KVPSPSQLSVTELPGDEAQLEWEAAAASGVLVCQITWTPLGEGKAHKISAPGNLGTAVPP
GLGRQSEYEITILAYYRDGARSDPVSLRYTPRSPPSNLALASESPDSLRVSWAPPSGRVL
HYQLSYALASGSGPEKSISIPGPRSHVTLPDLLAATKYRVLVSAVYXXXKSVAVSATGRT
AACPALHPDGSLPGFDLMAAFGLVETDYAAIRGXVEPSAFGPIRTFTLFKDAQLTRRASD
VHLATLPAEHTVVFLLRLLPETPREVFALWQVAAEDFRPVLGVLLDASRKSLTYFSRDPR
ATLQEATFDLPEVRRIFFGSFHKVHIAVGRSKVRLYVDCRKVAEKPTGEAGSLPTTGFVT
LGRLAKARGPRSSSASFQLQMLQIVCSDSWAEEDRCCELPASKNGETCPAFPSACACSSQ
TPGPPGPQGPPGHPGRDGAPGEQGFPGPRGPPGVKGEKGDHGRPGLQGHPGLQGTPGTVG
VQGPKGMRGLEGTAGLPGAPGPRGFQGTAGARGSSGERGPPGAVGPTGLPGPKGERGEKG
EPQSLATIYQLVGQASHLLKLHACTHESTRPPMPILEASRAFGTRREARLPGEGGHGGPR
PEDRGQHRTLKKGKHCHLHPLVRHIPPSPRLSLEPSVGQAALGRSGERTVPLLPRVSPNV
PPPDPGRRAQLEKGLEAEGGAPRPGPGAAPPCAACSDEPRVLVEERAAHWRGPTSAPSGG
APDSPPPFLGEEPPSILGLKDPPPQSPCNPGAGPRFLAHSPHPTPGSPSAWEARQPAVGP
GAKQFPEHQDEPGAGPVKVPR
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtgtgaacctagtggtgaccttggggtctgcagctgcgcagctgtgtctcccg
ctgcggggactcggcggggacatccgggcgggctggcagctgccgtgctggctcagtgcc
cgcgtctccgcaagcagccgcctgaggctggcggtgctgcctgaggaccggctgcagatg
aaatggagggagtcggaggggagcagcctcggctacctggtgcaggtgaagcccagggca
ggggacctggagcaggaggtgatgctgactaccaagacccccaaggccacggtggggggc
ctgagcccctccaaagggtacaccttgcagatcttctagctcacgggctcagggaatgtc
ctgctggctcggagggagtttgtgatcaaagacttgaagagtagctctgcgagcaggagc
agccggaggccactgggggcagccctggagcccagcccctcccacgaggggagcccagac
ctcgagcccccagtggccttgtccccaagccaagacctgcccacgcctgccggaccccag
ttccgctgcacgtcccccacacccgtggacatgatcttcctggtggatgggtcctggagt
attggtcacagtcacttccagcaggtcaaagacttcctggccagcatcattgagcccttt
gaaatcgggccagacaaagtccaagtaggcctgactcagtacagcggggacccccagacc
gagtgggacctgaatgcccttggcaccaaggaggaggtgctggccgccgtgcgcggcctc
cagtacagagggggaaacacgttcacaggcctggctctgacccacgtgctggaacagaac
ctgaagcctgtggcgggtctccgtccggaggcggccaagctggtgattctggtgacagac
ggcaagtcccaggacgatgcccgcactgctggccacatgctcaagggtctgggcatcgac
gtctttgccgtgggcgtgaagaacgccgatgatgctgagctgaggctcctggcatcccag
cctctggacatcaccgtgcacagcgtgcaggacttcccccagctcggctcactggccggc
ctgctcagccgcctcgtctgccagaaggtgcagggcaggcgcctgcacagcggcccagtt
acaccggccgcagccgctccggccctggaccccctttccgctcccaccggcctggtcctg
acccgggtgacctcctccagcatccacctgtcctggaccccagccccacggccacccctc
aagtacctgatcgtgttgcggccttctacgggcggcgcccccagggaggtggtggtggag
gcgcccgcctcgtcggcagagctgcacagcctgacctccagcatggagtacctggtctcc
gtgctccccgtcctcaaggccggcgtcggtgagggcctgcagggcctggtgaccacagca
cccctgcccccaccccaggtgctgaccctggccacagtgatgcccagagccatccacctc
acgtggcagccctcagcaggggccacccagtacctggtgcagtgctcgcccacatccccc
aagggcaaggaggaggggagagaggtgcgggtggggcagccagaggcactgctggatggg
ctggccccaggcagggactacgaggtgtgggtgcggagcctgcgaggggcagagatcagc
gaggcccagagcatccgcgccaggacccccgccctggccgcccccagacacctgagtttc
tcggacgtgagccatgactctgcccgagtgtcctgggagggcaccgcgaggcctgtgcgc
ctgttcagggtcagctacgtctcgagcaagggcggccactcgggacagacggaggctcct
gggagcgccacctcggtcactctgggccccctctcatcctccaccgcctacacagtccgc
gtcacctgcctctacgctgggggcagctcctccacacttactggccgcctgaccacacgg
aaagtccccagcccgagccagctgtcggtgacagagctgcctggggacgaagcccagctg
gagtgggaggccgcagcggcgtccggcgtgcttgtctgccagatcacgtggacgcccctg
ggagaggggaaggcccataagatctctgccccggggaacctgggcacggccgtcccgccc
ggcctggggaggcaatcggagtatgagatcaccatcctggcctactacagggacggggcc
cgcagtgaccccgtgtccctccgctacaccccccgtagcccaccctccaacctggccctg
gcctcggagtcgcctgacagcctgcgggtcagctgggcgcccccgagtggccgtgtcctc
cactaccagctctcctatgcactggcctcaggctcaggacccgagaagtcgatctccatt
ccaggacccagaagccatgtgactctccctgacctgctggcggccaccaagtaccgggtc
ctggtctcagccgtctacnnnnnnnnnaagagcgtggcagtgtctgccacaggccggacg
gcggcctgcccggccctccacccggatggctccctcccaggctttgacctgatggcagcc
ttcgggctggtggagacggactacgccgctatccgtggcnncgtggagccctcggccttt
ggccccatcaggaccttcacgctcttcaaggatgctcagctgacccgccgggccagcgac
gtccacttggccaccctccccgcggaacacacagtcgtcttcctcctgcgcctgctcccc
gagacgccccgcgaggtcttcgcgctgtggcaggtggcggccgaagacttccggcccgtc
ctgggggtcctgctggacgccagcagaaagtcgttgacctacttcagccgtgaccccagg
gccaccttgcaggaggccaccttcgacctgcccgaagtgaggaggatattctttgggagc
ttccacaaggtgcacatagccgtgggccgctccaaggtcaggctctacgtggactgccgg
aaggtggctgagaagcccactggggaggctggcagcctgcccaccaccggcttcgtcaca
ctggggagactggccaaggcccggggcccccggagcagctcagcctcgttccagctccag
atgctacagattgtgtgcagtgactcctgggcagaggaggacaggtgctgcgagctcccg
gcttcgaagaatggagagacctgccctgccttcccttctgcctgtgcgtgttcctcgcag
acccctgggcccccgggcccccaaggacctcctggccaccccgggagggacggagcccca
ggagagcagggcttcccagggcccaggggtccaccaggggtcaaaggagagaagggggac
catggacgccccggcttgcagggccaccccggcctccagggcacccctgggacggttggc
gtccagggaccaaagggaatgagaggcctggaggggactgctggcctgcccggagcccct
ggccctaggggcttccagggcacggcgggggccagaggcagcagtggggagcgaggaccc
ccgggtgctgtggggcccacggggctgccggggcccaagggggagcgaggagagaagggc
gagccacagtccttggccaccatctaccagctcgtgggccaggcctcgcacctgctgaag
ctccacgcctgcacccacgagagcacccggccccccatgcccatcttggaggcctccagg
gccttcggcacgcgcagagaggcccggctccctggagaaggggggcacggtggcccccgc
ccagaggacagaggtcagcataggaccctcaagaagggaaagcactgccacctgcacccc
ttggtccggcacatccctccttcccctcggctgagcctggagccctcagtcggacaggca
gccctgggccgcagcggggagcggacggtccccctgctgccccgagtgagcccgaatgtc
cccccgccggaccccggacgccgagcgcagctggagaagggtctggaggcggaaggaggg
gcgccgaggccgggcccgggggccgctcctccgtgcgctgcctgttcagatgaaccacgt
gtgcttgtcgaggagagggctgctcattggcggggccccacgtccgccccgtcgggtgga
gcccccgattccccacccccgtttctcggagaggagccgccatccatcctcggcctcaag
gaccccccgccacagtctccctgtaaccctggggctggcccccgcttccttgcccattcc
ccccaccccacccccggctccccatccgcctgggaggctcgccagccagccgtgggccct
ggggccaagcagttccccgaacaccaggatgaaccgggggcggggccggtgaaggttccg
aggtga
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