Lipotes vexillifer (Yangtze River dolphin): 103071971
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Entry
103071971 CDS
T03090
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04151
PI3K-Akt signaling pathway
lve04510
Focal adhesion
lve04512
ECM-receptor interaction
lve04611
Platelet activation
lve04820
Cytoskeleton in muscle cells
lve04926
Relaxin signaling pathway
lve04933
AGE-RAGE signaling pathway in diabetic complications
lve04974
Protein digestion and absorption
lve05146
Amoebiasis
lve05165
Human papillomavirus infection
lve05205
Proteoglycans in cancer
lve05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
103071971
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103071971
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103071971
09142 Cell motility
04820 Cytoskeleton in muscle cells
103071971
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
103071971
09152 Endocrine system
04926 Relaxin signaling pathway
103071971
09154 Digestive system
04974 Protein digestion and absorption
103071971
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
103071971
09172 Infectious disease: viral
05165 Human papillomavirus infection
103071971
09174 Infectious disease: parasitic
05146 Amoebiasis
103071971
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
103071971
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
103071971
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lve00536
]
103071971
Glycosaminoglycan binding proteins [BR:
lve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103071971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
103071971
NCBI-ProteinID:
XP_007465127
UniProt:
A0A340XY16
LinkDB
All DBs
Position
Unknown
AA seq
1463 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDEIKNCPNAKVPAGECCPVCPEGEASPTDRETTGVEGPKGDTGPR
GPRGPAGPPXXXXIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGSTGPAGPPGFPGAVGAKGEAGPQGSR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGTDGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGADGLAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGSRGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAAGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPSGPPGEAGKPGEQ
GVPGDIGAPGPSGARGERGFPGERGVQGPSGPAGPRGSNGAPGNDGAKGDAGAPGAPGNQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGAP
GAAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPSGPA
GKEGSKGPRGETGPAGRAGEVGPPGPPGPAGEKGAPGADGPAGAPGSPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE
GSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPV
GARGPTGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDFSFL
PQPPQEKAQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRD
LKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQRNWYISKNPKDK
RHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQT
GNLRKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIID
VAPLDVGAPDQEFGIDVGPVCFL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
catggccaagaggagggccaagaggaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgttgtgcgatgacgtgatctgcgacgaaatcaagaac
tgtcccaacgccaaagtccccgcgggcgagtgctgccccgtctgcccggaaggcgaggcg
tcacccacggaccgagaaaccactggagtcgagggacccaaaggagacactggcccccga
ggcccaaggggacccgctggccccccnnnnnnnnnnnnnattcctggacaacctggactt
cccggaccccccggacccccaggacctcccggaccccctggcctcggaggaaactttgct
ccccagatgtcttacggctatgatgagaaatcaacaggaatttctgtgcctggccccatg
ggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttc
caaggcccccctggtgagcctggcgagcctggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgacggtgaagctggaaagcctggtcgtcct
ggtgagcgcgggcctcctggacctcagggggctcggggattgcccggaacagctggcctc
cccggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggtcccaagggtgagcctggtagccctggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgct
cgtggaaatgatggtgctactggtgctgctggaccccctggttccactggccccgctggt
cctcctggtttccctggtgctgttggtgctaagggtgaagctggtccccaaggatcccga
ggctctgaaggtccccaaggtgtgcgtggcgagcccggcccccctggtcctgctggtgcc
gctggccctgctggaaaccctggtactgatggacagcctggtgctaaaggtgccaatggc
gctcctggtatcgctggtgctcctggcttcccgggtgcccgaggcccctctggaccccag
ggtcccagcggcccccctggtcccaagggtaacagcggtgaacctggtgctcctggcaac
aaaggagacactggcgccaagggagagcccggccccaccggtattcaaggcccccctggc
cctgctggggaagaaggaaagcgaggagcccgaggcgaacccggacccgcgggcctgcct
ggaccccctggcgagcgtggtggacccggaagccgcggctttcctggcgcagatggtctt
gctggtcccaagggtcccgctggtgaacgtggtgctcctggccctgctggccccaaaggt
tctcccggtgaagctggtcgccccggtgaagctggtctgcctggtgccaagggtctgact
ggaagccctggcagccctggtcctgatggcaaaactggcccccctggtcctgctggtcaa
gatggccgccccggacccccaggccctcctggtagccgtggtcaggccggtgtgatgggt
ttccctgggcctaaaggtgctgctggagaacccggcaaggctggagaacgaggcgttcct
ggaccccccggcgctgctggtcctgctggcaaagacggagaagctggagctcagggacct
cccggacctgctggccctgctggtgagagaggtgaacaaggccctgctggctcccccgga
ttccagggtctccctggcccttctggtcctcctggtgaagcaggcaaacccggtgaacag
ggtgttcctggagacatcggtgcccccggcccctctggagcaagaggcgagagaggtttc
cccggcgagcgtggtgtgcaagggccctccggtcctgcaggtccccgtgggtccaacggt
gcccctggcaatgatggtgctaagggcgatgctggtgcccctggagcccctggtaaccag
ggtgcccctggccttcaaggaatgcctggtgaacgaggtgcagcaggtctcccaggccct
aagggtgacagaggcgatgctggtcccaaaggtgctgatggtgctcctggcaaagatggc
gtccgtggtctgactggtcccattggtccaccgggccccgctggtgcccctggtgacaag
ggtgaaactggtcctagcggccctgctggtcccactggagctcgtggtgcccccggagac
cgtggtgagcctggtccccctggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacctggtgatgctggtgctaaaggcgatgctggtgccccc
ggcgctgctggacccactggacctcctggccccattggtaacgttggtgctcccggaccc
aaaggtgctcgtggcagcgctggtccccctggtgctactggcttccccggtgctgctggc
cgagtcggtccccctgggccctctggaaacgctggaccccctggaccttctggtcctgct
ggcaaagaaggcagcaaaggcccccgcggtgagactggccccgctgggcgtgctggtgaa
gtcggtcctcccggtccccctggccccgctggtgagaaaggagcccctggtgctgatgga
cctgctggcgctcccggctctcccggacctcaaggtattgctggacagcgtggcgtggtc
ggcctgcccggtcagcgaggagaaagaggcttccctggtcttcccggcccctctggtgaa
cccggcaaacaaggtccttctggagcaagtggtgaacgtggcccccctggtcccatgggc
ccccccggattggctggaccccctggcgagtctggacgtgagggagcccctggtgctgaa
ggatcccctggacgagatggttctccgggccccaagggtgaccgtggtgagaccggccct
gcgggaccccctggtgctcctggtgcccctggtgcccccggccccgtcggccctgctggc
aagagcggcgatcgtggcgagactggtcctgctggtcctgctggccccattggccccgtt
ggtgcccgcggccccaccggaccccaaggcccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcattaagggtcaccgtggcttctctggtctccagggtccccctggc
cctcccggctctcctggtgagcaaggtccatccggagcttctggtcccgctggtccccgc
ggtccccctggctctgctggttctcctggcaaagatggactcaacggtctcccaggcccc
atcggtccccctggtcctcgtggtcgcactggtgatgctggtcctgctggtccccccggc
cctcccggaccccctggtccccctggtcctcccagcggtggttacgacttcagcttcctg
cctcagccacctcaagagaaggctcaggatggtggccgctactaccgggccgatgatgcc
aatgtggtccgtgaccgtgacctcgaggtggacaccactctcaagagcctgagccagcag
atcgagaacatccggagccctgaaggcagccgcaagaaccctgcccgcacctgccgtgac
ctcaagatgtgccactccgactggaagagtggagaatactggattgaccccaaccaaggc
tgcaacctggatgccattaaggtcttctgcaacatggagacaggtgagacctgcgtgtat
cccactcagcccagcgtggcccagaggaactggtatatcagcaagaaccccaaggacaag
aggcacgtctggtacggcgagagcatgaccggcggattccagttcgagtacggcggccag
ggctccgatcctgccgatgtggccatccagctgactttcctgcgcctgatgtccactgag
gcctcccagaacatcacctaccactgcaagaacagcgtggcctatatggaccagcagact
ggcaacctcaggaaggccctgctcctccagggctccaacgagattgagatccgggccgag
ggcaacagccgcttcacctacagcgtcacctacgacggctgcacgagtcacaccggagcc
tggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgat
gtggcccccttggacgttggcgccccagaccaggaattcggcatcgacgttggccctgtc
tgcttcctgtaa
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