Lipotes vexillifer (Yangtze River dolphin): 103075104
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Entry
103075104 CDS
T03090
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain-like
KO
K19720
collagen type III alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04611
Platelet activation
lve04820
Cytoskeleton in muscle cells
lve04926
Relaxin signaling pathway
lve04933
AGE-RAGE signaling pathway in diabetic complications
lve04974
Protein digestion and absorption
lve05146
Amoebiasis
lve05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103075104 (COL3A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
103075104 (COL3A1)
09152 Endocrine system
04926 Relaxin signaling pathway
103075104 (COL3A1)
09154 Digestive system
04974 Protein digestion and absorption
103075104 (COL3A1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
103075104 (COL3A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
103075104 (COL3A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
103075104 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lve00536
]
103075104 (COL3A1)
Glycosaminoglycan binding proteins [BR:
lve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103075104 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
103075104
NCBI-ProteinID:
XP_007465044
UniProt:
A0A340Y0E1
LinkDB
All DBs
Position
Unknown
AA seq
1462 aa
AA seq
DB search
MMSFVQKGTWLLFALLHPTVILAQQEVVEGGCSHLGQSYADRDVWKPEPCQICVCDSGSV
LCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGHGPQGPKGDPGPPGIPGRN
GDPGLPGLPGSPGSPGPPGICESCPTGNQNYSPQYEAYDVKSGVPGGITGYPGPAGPPGP
PGLPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPLGPAGKDGESGRPGRPGE
RGLPGPPGVKGPAGMPGFPGMKGHRGFDGRNGEKGEQGAPGLKGENGLPGENGSPGAMGP
RGPAGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGS
SGSPGQRGEPGPQGHAGAPGPPGPPGNNGSPGGKGEMGPAGIPGAPGLIGARGPPGPSGT
NGAPGQRGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGLKGEDGKDGSPGEPGANGLPGA
AGERGMPGFRGPTGANGLPGEKGPPGERGGPGPAGPRGVAGEPGRDGLPGGPGLRGMPGS
PGGPGSDGKPGPPGSQGETGRPGPPGSPGSRGQPGVMGFPGPKGNDGAPGKNGERGSPGG
PGLQGPAGKNGETGPQGPPGPTGPGGDKGDPGSPGPQGLQGLPGTSGPPGENGKPGEPGP
KGEPGAPGIPGGKGESGAPGERGPTGPTGTPGPRGGTGPPGSEGGKGPAGLPGPPGNAGS
PGLQGMPGERGVPGGPGPKGDKGEPGSSGVDGAPGKDGPRGPTGPIGPPGPAGQPGDKGE
SGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGI
AGPPGSAGPSGAPGPPGVKGERGSPGGPGAAGFPGGRGPPGTPGNNGNPGPPGSSGPPGK
DGPPGPAGNNGAPGSPGMPGPKGDAGQPGEKGTPGSQGPPGAPGPLGHTGIAGARGLAGQ
PGPPGVKGSTGPQGPKGENGKPGIGGLNGERGPPGAQGLPGLAGAAGEPGRDGNPGSDGL
PGRDGAPGSKGDRGENGSPGPPGAPGHPGPPGPVGAAGXXXXXXXXGPAGPSGAPGPVGS
RGPPGPQGPRGDKGETGERGANGIKGHRGFPGNPGAPGSPGPSGHQGAVGGPGPAGPRGP
VGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGPEGSPGHPGQPGPPGSPGAPGPCCGPAV
ITGIGGEKSGGFAPYYGDEPMDFKINTDEIMMSLKSVNGQIESLLSPDGSRKNPARNCRD
LKFCHPELKSGEYWVDPNQGCKMDAIKVYCNMETGETCINASPLTVPRKNWWTNSAAEKK
HVWFGESMDGGFQFSYGNPELPEDVLDVQLAFLRLLSSQASQNITYHCKNSIAYMDHASG
NVKKALRLMGSNDGEFKAEGNGKFTYSVLEDGCTKHTGEWGKTVFEYRTRKAVRLPIVDI
APYDIGGPDQEFGVDVGPVCFL
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaggggacctggttacttttcgctctgcttcatcccactgtt
attctggcacaacaggaagttgttgaaggaggatgctcccatcttggtcagtcctatgcg
gatagagatgtctggaaaccagaaccatgccaaatatgtgtctgtgactcaggatctgtt
ctctgtgatgacataatatgtgatgaccaagaattagactgtcccaaccccgagatccca
tttggagaatgttgtgcagtttgcccacagcctccaacagctcccactcgccctcctaat
ggtcatggacctcaaggccccaaaggagatccaggtcctcctggtattcctgggagaaat
ggtgatcctggtcttccaggactgccaggttcccctggttctcccggccctcctggaatc
tgtgaatcgtgccctactggtaaccagaactattctccccagtatgaggcatatgatgtc
aagtctggagtaccaggaggaatcacaggctatcccgggccagctggtccgcccggccca
cccggtctccctggtacatctggtcatcctggttcccctggttctccaggataccaaggt
ccccctggtgaacctgggcaagctggtcctgcaggtcctccaggacctcctggtgctata
ggtccattaggtcctgctggaaaggatggggaatcaggaagacccggacgacctggagag
cgaggactgcctggccctccaggtgttaaaggtccagctggcatgcctggattccctggt
atgaaaggacatagaggctttgatggaagaaatggagaaaaaggcgagcaaggtgctcct
ggattaaagggtgaaaatggccttccaggtgaaaatggatctcctggagcaatgggtcca
agaggacctgctggtgagagaggacgaccaggacttcctggagctgcaggggctcgaggt
aatgatggagcccgaggaagtgatggacaaccaggtccccctggtccccctggaactgca
ggattccctggttcccctggtgctaagggtgaagttggacctgcgggatctcctggttca
agtggctcccctggacaaagaggagaacctggacctcagggacatgctggtgctccaggt
cctcctggccctcctgggaataatggtagtcctggtggtaaaggtgaaatgggtcctgct
ggcattcctggggcccctggactgataggagcccgcggtcctccaggaccctctggtacc
aatggtgctcccgggcagcgaggtgctgcaggtgaacccggtaagaatggagccaaagga
gagccaggaccacgtggggaacgcggggaggctggttctccaggtattccaggacttaag
ggtgaggatggcaaagacggttctcctggagaacctggtgcgaacggacttcccggagct
gcaggagaaaggggtatgcctggattccgaggacctactggagcaaatggccttccagga
gaaaagggtccccccggggaacgtggtggtccaggccctgcagggcccagaggagttgct
ggagaacctggccgagacggcctccctggaggtccaggattgaggggtatgcccggtagt
cctggaggaccaggcagtgatgggaaaccagggcctcccggaagtcaaggagaaactggt
cgaccaggtcctccaggctcacctggttcccgaggtcagcctggtgtcatgggtttccct
ggtcctaaaggaaatgatggtgctcctggaaagaatggagaacgtggtagtcctggaggt
cctggccttcagggtcctgctggaaagaatggtgagactggacctcagggccccccagga
cctaccgggccaggtggtgacaaaggagacccaggaagccctggtccacaaggattacaa
ggcttgcctggaacgagtggtcctccaggagaaaatggaaaacctggtgaacctggccca
aagggtgagcctggtgcacctggaattccaggaggcaagggtgagtctggtgcccccggt
gaacgtggacctactggacctacagggacccctgggcctagagggggaactggcccccct
ggttctgaaggaggaaagggccctgctggtctccctgggccacctggtaatgctggttca
cctggtctgcaaggaatgcctggagaaagaggggttcctggaggccctggtccaaaaggt
gataagggtgagcccggcagttcaggtgtcgatggtgctccagggaaagatggtccaagg
ggtcctactggccccattggtccccctggcccagctggtcagcctggagataagggagaa
agtggttcccctggacttccgggtatagctggtcctcgtggtggccctggtgagagaggt
gaacatgggccaccaggacctgccggcttccctggtgctcctggccagaacggtgagcct
ggtggtaaaggtgaaagaggcgctcctggtgagaaaggtgaaggtggccctcctggaatt
gcagggccccccggaagtgctgggccttctggtgcccctggtcccccaggtgtcaaaggc
gaacgtggcagtcctggtggtcctggtgctgctggcttccctggtggtcgtggtcctcct
ggtactcctggcaataacggtaacccaggccccccaggatccagtggtcctccaggcaaa
gatggccccccaggtccagctggtaataatggtgctcctggcagccctgggatgcctgga
ccaaagggtgatgctggccaaccaggtgagaagggaacacctggctcccagggccctccg
ggagctccaggcccacttggacatacagggattgctggagcacgaggtcttgcaggccaa
ccaggcccaccaggtgttaagggcagcaccggcccacagggccccaagggtgaaaatggg
aaaccaggaattggtggtctcaatggagaacgtggtcctcctggagcccagggtcttcct
ggtctggctggtgcagctggtgaacctggaagagatggaaaccctggatcagatggtctg
ccaggccgagatggagctcctggtagcaagggtgaccgtggtgaaaatggctctcctgga
ccccctggtgctcctggtcatccaggtccccctggccctgtcggtgcagctggannnnnn
nnnnnnnnnnnnnnnnagggccctgctggtccttctggtgctccaggtcctgttggctca
agaggtcctcctggtccccaaggcccacgtggtgacaaaggcgaaacgggtgaacgtggt
gctaatggcatcaaaggacatcgtggattccctggtaacccaggtgccccaggttcccca
ggtccctctggtcaccaaggtgcagtaggtggtccaggacctgcaggccccagaggacct
gttggacccagtgggccccctggcaaagatggaacaagtggacaccctggtcccattgga
ccaccagggcctcgaggtaacagaggcgaaagaggacctgagggctccccaggccaccca
ggacaaccaggccctcctggttcccctggtgcccctggtccatgctgtgggcctgctgtc
atcactggcattggaggtgaaaaatctgggggttttgccccatattatggagatgaacca
atggatttcaaaatcaacaccgacgagattatgatgtcactcaaatcagtcaatggacaa
atagaaagcctccttagtcctgatggttcccgtaaaaaccctgctcggaactgcagagac
ctgaaattctgccatcctgaactcaagagtggagaatattgggttgatcctaaccaaggt
tgcaagatggatgctattaaagtatactgtaacatggaaactggggaaacgtgcataaat
gccagtcctttgactgttccacgtaagaactggtggacaaattctgctgctgagaagaaa
catgtttggtttggagaatccatggatggtggttttcagtttagctatggcaaccctgaa
cttcctgaagatgtcctcgatgtccagctggcattcctccgacttctctccagccaggcc
tcccagaacatcacatatcactgcaagaatagcattgcatacatggatcatgccagtggg
aatgtgaagaaagccttgaggctgatgggctcaaatgacggcgaattcaaggctgaagga
aatggcaaattcacctactcagttctggaggatggttgcactaaacacactggggaatgg
ggcaaaacagtcttcgaatatcgaacacgcaaggccgtcagactacctattgtagatatt
gcaccctacgatattggtggtcctgatcaagaatttggtgtggacgttggccctgtttgc
tttttataa
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