Lipotes vexillifer (Yangtze River dolphin): 103075840
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Entry
103075840 CDS
T03090
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain
KO
K08132
collagen type XII alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103075840 (COL12A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lve00535
]
103075840 (COL12A1)
Proteoglycans [BR:
lve00535
]
Extracellular matrix (ECM) proteoglycans
Others
103075840 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
103075840
NCBI-ProteinID:
XP_007456657
UniProt:
A0A340X9C9
LinkDB
All DBs
Position
Unknown
AA seq
3120 aa
AA seq
DB search
MRTKLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWARPPDPIVGFKITVD
STTDGPTKEFTLAASTTETLLTELIPEIEYVVTITSYDDVEESVPVIGQLTIQTGGPIKP
GEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDVGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGEAIDYLIKNTFTESAGSRVG
FPKVAIIITDGKSQDEVEIPARELRSIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDDQLGELVSGEEVVEPPSNLIATEVSSKYVKLSWNPSPSP
VTGYKVLLTPMTAGSRQHALSVGPQTTTLNVRDLSADTEYQISVSAMKGLTSSEPVSIME
KTQPMKIQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSD
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYSLKTSWSPSGENVF
SYRITYKEANGDGEVTVVEPASSTSVVLSNLKPETLYLVNVTAEYEDGFSTPLAGEETTA
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIIYRPVAGGESKEVTSPANQRRRTLE
NLTPDTKYEVSVIPEYFSGSGSPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWTRAPGK
VKQYLVTYTPVAGGETQEVTVKGDTANTVLRGLNEGTQYALSVTALYASGAGDALFGEGA
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDIEAGEKSLPGDAIHT
IIENLQPETKYRVSVFATYSSGEGEPLSGEATTELSDDSKTLKVDEETENTMRVTWKPAP
GKVVNYRVVYRPRVGGRQMVAKVSPTVTSTMLKRLQPQTMYDITVLPVYKTGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPVLSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWQLNAHKDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAVGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLIVNLCNSVK
GPGDLEAPSNLVISEQTHRSMRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLESSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLTIYDIGSTTMHVQWQPVGGA
TGYALSYEPINATEPTKPKEMRMEPTVTDVQLSDLFPNTEYAVTVRAALHDLTSDPFTAR
EVTLPLPSPRDLKLRDVTHSTMNVLWEPAPGKVLKYIVRYKTPEEDAKEVEVDRSWASTP
LKDLFSQTRYTVSVSAVYDEGESPPVTAQETTRTVPAPANLQITEVTPESFRGTWDHGAS
DVSLYRITWAPSGSTDKMETILNGDENTLVFQNLNPNTLYEVSVTAIYPDESESDDLTGS
ERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSAGEGNEQT
TMVGGRQNSVLLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLNVRWDHAEGSPRQYKLFYAPTAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYS
EGDGGRTSDTGRTLVRGLARNVQVYNPTPNSLDVRWGSAPGPVQQYRVVYSPLAGQRPSE
SIVVPGNTRTVHLERLIPDTPYSVNIVALYSDAEGTPSPAQGRTLPRSGPRNLRVFGETP
NSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVMLQPLQSDTPYKITVIAV
YEDGDGTHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
MEVFVGEMTSYTLHNLSPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWD
TFCVRWSAHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPN
LEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPAREVCKGAKADIVFLTDASWSIGDDN
FNKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRG
GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVV
GVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTS
PGFKMLEAYNLTEKNFAFVQGVSLESGSFASYSSYRLLKNAFVNQPTADLHPNGLPTSYT
IILLFRLLPETPNDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTITFDTD
EVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIREAGNITTDGYEILGKLLKGERKS
ATFQIQNFDIVCSPVWTSRDRCCDIPSRRDEAKCPSLPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGISGAIGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPG
LPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG
DHGRPGASGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMSRFNQMLNQIPNDYHSSR
NQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGIGSPGPRG
LPGPSGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQG
YPEPYVPEGGAYLPEREPFIVPVEPERTADEYEDYGADEPAEERPPHERWRRALLRGPRQ
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccaagcttcccccagcgctcgccgccctgggcgcggccctgctcctgtcttcc
attgaggcagaagttgacccaccttcagacttgaattttaaaattatagatgaaaatact
gttcatatgtcatgggcaagaccacctgatccaattgtgggtttcaaaataacagtggac
tccacaacggatgggcccactaaagaatttacccttgcagctagtaccactgaaacttta
ttaacagagcttatacctgaaatagagtatgtggtgacaatcacttcatatgatgacgta
gaagaaagtgtaccagttataggccaattaacaattcaaacaggtggcccgataaagcca
ggggagaagaaacctggaaaaacagagatacaaaaatgctctgtcagtgcctggactgat
ttagtgttccttgtggatggctcatggagtgtgggaagaaataatttcaagtacatttta
gacttcattgctgctcttgtctctgcttttgacgttggggaagagaagacaagggttgga
gttgttcagtacagctctgacaccaggacggaatttaacttaaatcagtactaccaacgg
gatgagctgcttgctgcaattaaaaaaatcccatacaaaggtggcaacacgatgacaggg
gaagccattgattacttaattaaaaatactttcacggaatctgctggatcaagagttggc
tttcccaaagtggcaattattattacagatggcaaatcccaggacgaagtggaaattcca
gcaagagagcttcgaagtattggggttgaagtgttctctttgggcatcaaagctgcagat
gcaaaagaactcaaacaaatcgcctccacaccttcactaaatcacgttttcaacgtggcc
aacttcgatgcgattgtggatattcagaatgagatcatctcccaggtgtgctcaggtgtg
gatgaccagcttggagaactggtcagtggagaggaagttgttgaacctccttcaaatttg
attgccacggaagtctcatcaaaatacgttaagctaagttggaatccatctcctagccca
gtgactggctataaagttctccttacacccatgaccgcaggaagccgacagcatgctctg
agtgtgggtcctcagacgaccacactcaatgttcgtgacctctcagcagacacagaatac
cagatcagcgtttctgccatgaagggactgacatccagtgaaccggtttcaataatggag
aagactcagccaatgaaaattcaagtggaatgctcacgtggtgtggatataaaagccgat
attgtgtttttggttgatggctcctatagcattgggattgcaaactttgttaaagttaga
gcctttttggaagttctcgtaaaaagttttgagatttcaccaaatagggtacagataagc
cttgtccagtacagccgggatcctcatactgagttcacattgaaaaaattcaccaaagtt
gaagatataattgaagcaataaacaccttcccctacagaggaggatctaccaacactggg
aaagcaatgacttacgttagagagaaaatatttgtgccaagcaagggttcaagaagcgac
gtcccaaaggtcatgattcttatcacggatggaaaatcttccgatgctttcagagaccca
gctataaaactaaggaattcagatgttgaaatctttgcggttggtgtgaaggatgctgtt
cgctcagaattagaggccattgcctctcctcctgctgagacccatgtgttcacagtggaa
gattttgatgcttttcagaggatatcttttgaactcacacagtctatctgtcttagaatt
gagcaagaattggcagctataaagaaaaaagcttatgtgcctccaaaggatcttagtttt
tctgaggtgacttcctacagtttgaaaaccagttggtctccttctggagaaaatgttttt
tcataccgcatcacctacaaggaggctaatggggatggtgaggtgacagtggtggagcca
gcctcgagcaccagtgtcgttctcagcaacttgaagccagagaccctgtacctggtcaac
gtgaccgcggaatacgaggatggcttcagtacacccttagctggagaggagaccaccgca
gaagtaaaaggagcacctcgaaacctaaaggtgacggatgagactacagatagctttaaa
attacctggactcaggctccggggagagtcttaaggtatcgaattatctatagaccagtt
gctggtggagaaagcaaagaggttaccagcccagccaatcagaggaggaggacgctggag
aacctgactccagacacaaaatatgaagtatctgtaattcctgaatatttctcaggatct
ggctctccgttgactggaaatgcagccactgaagaagttagagggaacccaagagattta
agagtttctgaccctacgacatcaactatgaaattatcttggactcgggcaccaggaaaa
gtgaaacagtatctcgtcacatacacccccgtggcaggaggcgagactcaagaggtcact
gtgaagggagacacagccaatactgtcctgagaggattaaacgaagggacacagtatgcc
ttatccgtgacagccttgtatgcatccggggctggagatgccctttttggagaaggggca
acgcttgaagagcgtggttcacctcaggatttggttactaaagatatcactgacacatcg
attggcgcttactggacatctgctccaggaatggttcgcggttacagggtctcttggaaa
tcgctgtatgatgatattgaggctggagagaagagtcttcctggagatgcaattcatacc
atcatagaaaatctgcagccagaaacaaaatacagagtttcagtatttgcaacttacagt
agcggagaaggagaacctttgagtggagaagccacaactgaattatccgatgattcgaaa
accttgaaagtggatgaagaaacagaaaacacaatgagagttacctggaaaccagcacct
gggaaagttgtcaactaccgtgttgtgtatcgcccccgtgtgggcgggagacagatggtt
gccaaggtgtcacctactgtcacctcaacaatgttaaagcgacttcagccccagaccatg
tatgacatcacagttctcccagtttacaagacaggagaaggaaagcttaggcaaggttca
ggaacaacagcttctcgatttaaatcacccagaaacctcaaaacatctgacccaaccatg
tcaagcttccgggtgacttgggagcctgcacctggggaggtcaagggttacaaggtcaca
tttcaccccacgggagatgacagaagactgggggagttagtggttggaccatatgacaac
acagttgttttggaggaacttagggcaggtaccacctataaagtaaatgtttttggaatg
tttgatggaggagaaagttcaccacttgttggacaagaaatgacaactctctctgacaca
actgtaatgccagttttatcctctgggatggagtgtctcaccagggctgaagcagacatc
gtgctgctggtggatgggtcgtggagcatcggccgggccaattttagaaccgtgaggagc
ttcatctcccgtatcgtggaagtctttgagattggccccaaaagagtacagattgccctt
gctcagtatagcggggaccccagaacagagtggcagttaaatgctcacaaagacaagaag
agcttgttgcaggctgtggcaaacctaccttacaaaggaggcaataccctcacaggcatg
gctttgaatttcattcgccaacagagcttcaagacccaagctggcatgaggcctcgagct
cgaaaaatcggcgttctcatcactgacggaaaatcacaagatgacgttgaggcaccttca
aaaaaactcaaggatgagggcgtggaactgtttgctgttggtattaaaaatgctgatgaa
gttgagttaaagatgatcgcaacagatcccgatgatacccatgcatacaatgtggcggat
tttgagtccctctccaggatcgtggatgacctcatcgtcaacttgtgtaacagcgtcaaa
ggtccaggtgacttggaagcaccttccaacctagttatttctgagcagacccatcgttct
atgagagtgagctggacacctccttctgacagtgtggataggtataaggtggaatactac
ccggtttctggagggaaacggcaagaattttatgtgagccggttggaaagtagcacagta
ctgaaagatctgaagcctgaaactgagtacgttgttaatgtctattctgtggtagaagat
gaatacagtgagcctctgaagggcacagaaaaaaccttgccggtgcccgtggtcagcctg
accatttacgacattggctcgaccaccatgcacgtgcagtggcagccagtggggggcgct
actggctacgccttgtcctacgaacccatcaacgccacagagccgaccaaacccaaagag
atgcgcatggaaccgacagtgaccgatgtgcagctgagtgacctcttccccaacactgag
tacgcggtcacggtccgggccgcccttcacgacctcaccagcgaccccttcactgcgagg
gaggtcaccttgcctttgcccagtcctcgagatctgaaactcagagatgtgactcacagc
accatgaacgtcttatgggaacctgcacctggaaaagtgcttaaatacattgttcgctac
aaaacaccggaagaggatgccaaagaggtagaggtggacaggtcatgggccagcacacct
cttaaagacctcttctcacaaacccggtacacagtcagcgtgtctgcagtatatgatgaa
ggggagtctcccccagtgactgctcaagaaaccacccgcactgtgccagccccagcaaac
ctacagattactgaagtaacaccagagagtttcagagggacttgggatcacggagcttct
gatgtgtctctctacagaatcacctgggcaccttctggaagcacagataagatggagacc
atcctaaatggagatgagaatactttggtgtttcaaaacctgaacccgaacactctctat
gaagtttctgttactgccatttatcctgatgagtcagaaagcgatgacctgactggcagc
gagcgcacattgcgtttgatacccttaacaacacaagctccaaaaagtggcccacggaac
cttcaggtgtacaatgcaacttctaacagcttgactgttaagtgggatcctgctagcggt
cgtgtgcagaaatacagaatcacctatcagccttcagcaggggaaggcaatgaacaaacg
accatggtaggaggacggcaaaacagtgtgctcctacagaagctgaagcccgacactcct
tacacaatcactgtgtcctccctgtatccagatggtgaaggcggtcgcatgacaggaagg
ggcaagaccaaacctttgaatactgtgaggaacctcagagtgtacgacccttccaccagc
actttgaacgttcgctgggaccacgcagagggcagtcctcgccagtacaagctcttctat
gcacccacagcaggcggtccggaggaactggtaccaatccctgggaataccaattatgcc
attcttaggaatctgcagccagatacctcatacactgttacagtagttcccgtttattct
gaaggtgatggaggacgcacatcagatactggaaggacattggtgagagggctggcaaga
aacgtccaagtgtacaatccaacgccaaacagcctggacgttcgctggggctcggcgccg
gggccggtgcagcagtaccgcgtcgtgtattcgcccctggctggccagagaccctcggaa
tctatcgtggtgccaggaaatacccgcacggtgcacttggagcggctgattccggacaca
ccctattccgtgaacatcgttgccctctactcggatgcagaggggactcccagccccgcc
cagggccgcacgttaccacgaagtggaccaagaaatctgagagtctttggggagacaccc
aacagcctctcggtagcctgggaccacgctgatgggccggttcagcaatacaggatcatt
tattctcccaccgttggtgacccaattgatgaatataccactgtcccaggcagaagaaac
aatgtaatgctacagcccctgcaatctgataccccatataaaattactgttattgctgtt
tatgaagatggagatggtacccatttgacaggaaatggaagaactgtgggattacttcct
cctcagaacatacacatctcagatgaatggtatacgagattcagagtgtcctgggatcct
tcaccatctcccgttcttggatataaaattgtgtataagccagtgggttccaatgagccc
atggaggtctttgttggagaaatgacatcatacacgttacacaatctcagccccagcacc
acctatgacgtgaatgtttacgcgcagtatgattctggtctcagtgtccctctgacggac
caaggcactaccttatatttgaatgtgacagatctgaaaacttaccaggtcgggtgggat
acattctgtgttagatggtcagctcaccgggcagccacttcctacaggctaaaactaagc
cctgcagatggaacaagaggacaggaaattacagtgcgtggatcagaaaccagtcactgt
ttcactggcctgtcaccagacactgattatggcgtcactgtctttgtgcagacaccaaat
cttgagggaccaggtgtctctgtcaaagaacatactactgtaaaaccaacagaagctcct
acagagccgcctacacctcctccccctcccacgattccaccagcccgggaagtgtgcaaa
ggggccaaggcagatattgtattcttgactgatgcctcctggagtatcggggatgataat
tttaacaaagttgtaaaattcatcttcaatactgtgggagcctttgatgaaatcagtccc
gctggaattcaggtctcatttgtgcagtacagcgatgaggtcaagtctgagtttaagctg
aacacgtacaacgacaaggccctggccctcggggccctccagaatatccggtacagagga
ggaaacacaagaacaggcaaagctctcacgtttatcaaggagaaagtcttgacctgggag
agtggtatgaggaagaatgtccccaaggtgctggtcgtggtcacagacggtcggtcacag
gacgaggtcaagaaggcggctttggtcatccagcagtcagggttcagtgtctttgtagtt
ggcgtggctgatgttgactacaacgaacttgccaacatagccagcaaaccaagcgagcgg
cacgtgttcattgtggatgactttgaatcttttgagaagatagaggacaacctcatcaca
tttgtctgtgaaactgccacttcaagttgtcctctcatttatttggatggctacacctca
ccaggttttaagatgcttgaagcatacaacctgacagaaaagaattttgcttttgtgcaa
ggagtctctttggagtcagggtcttttgccagctactcatcttacaggcttctgaagaac
gcctttgtgaatcagcctacagcagatctacatcccaatggcctccccacttcatatacg
attatattactattcagacttctcccagaaactccgaacgaccctttcgcaatttggcag
atcacagacagagactacaaaccacaagttggggtgattgcagatccttctagcaagaca
ttatcattctttaacaaggatacaaggggtgaggtacaaactattacatttgacacagat
gaagtgaagacattattctatggaagttttcataaggttcatatcgtagtgacctcaaaa
agtgttaagatttacattgactgctatgaaattatagagaaggacatcagggaagctgga
aatatcacaactgatggttatgaaattcttggaaaactacttaaaggggagaggaaatca
gccacattccaaatccagaattttgatattgtctgcagtccagtgtggaccagtagagac
agatgctgtgatattccttccaggagagatgaagcaaaatgccccagtcttccaaatgct
tgcacgtgtacgcaggacagcgttggacctccaggaccaccaggccctgcgggaggacct
ggtgctaaaggtcccagaggtgaaagaggtatcagtggggcaattggcccccctggtcct
cgtggagatacaggtcctcccggtccccagggtccgccaggcccccagggacccaacggc
ctctctattccaggagaacaaggtcgccagggcatgaagggcgatgctggagagccggga
cttccaggccggacgggaaccccaggattacctggcccaccaggaccaatgggccctcca
ggagatagaggctttactggaaaagatggagcaatgggacctaggggcccccctgggcca
ccgggaagcccaggctctccaggagtcacaggaccgagtgggaaaccaggaaaacccgga
gaccatggcagaccaggtgcatcgggattgaaaggagagaaaggtgatagaggagacatt
gcttcccagaacatgatgcgagcagttgcaagacaagtctgtgaacaactgataagtggt
cagatgagcagattcaatcagatgctgaatcagattccaaacgactaccactctagtcgc
aaccaaccaggcccgccgggtcctccagggccccctggcagcgcgggagccagaggagaa
ccagggcctggggggcggccaggcttcccgggcacaccagggatgcagggacccccgggt
gaacgaggtttgccgggagagaaaggcgaaaggggtattggatctcccggacctcgaggg
ctgcctggcccctcaggtccacaaggagaatccagaacgggtccaccagggtccacaggt
tcaagaggtcctccaggtccccccggtcgtcctggaaactcaggtatccgaggcccccca
ggtcctcctggatactgtgactcttcccagtgtgccagcatcccatacaatggacaaggc
tatccagagccctacgtgcccgagggcggggcctacctgcctgagcgcgagcccttcatc
gtgccggtggagcccgagcggacggcggacgagtacgaggactatggcgccgacgagccc
gccgaggagcgtcctccccatgagcgctggcggcgcgccctgctccgcggcccccggcag
tga
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integrated database retrieval system
