Lipotes vexillifer (Yangtze River dolphin): 103087227
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Entry
103087227 CDS
T03090
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
103087227 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lve03400
]
103087227 (LIG3)
Enzymes [BR:
lve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103087227 (LIG3)
DNA repair and recombination proteins [BR:
lve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
103087227 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
103087227
NCBI-ProteinID:
XP_007446641
UniProt:
A0A340WDH7
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MTLAFKILLPPTLRALSQKELCLFREQHHWPDIRQFSQWSETVLRGHLLLQRRKPVVSFQ
ESNLRPRATCLDFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGMCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQH
IADLSSKAANTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSGFSAKPNNSGEAH
SIPTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDGFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMARDLEQGDVSETIRVFFEQ
SKSFPPASKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLHDVVERVLRNEQEVKKEPGRKRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDYFSYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDNKKGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLFERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINRVIQEGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTQIRDDKDWKSATNLPQLKELYQLSKERAAFAI
VARDEGSSTTGGSSGENEGISGPAVSHEAPRTSPKQPSASAKKAGGKLSSSNSKGGNLLG
SHPELSPAGNKLAAKPSPVKVGEKRKAPDETPCQAKVLLDIFTGVRLYLPPSTPDFSRLR
RYFVAFDGDLAQEFDVASATHVLGSRDKNPEAQQVTPEWIWACIRKRRLVAPC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgactttggcttttaagatcctcttaccaccaactctccgtgcgctcagccaaaaagaa
ctgtgcctattccgagaacaacatcactggcctgacataagacagttcagccagtggtca
gaaacagttcttcgtggacaccttctcctccagagaagaaagcctgttgtgtcattccag
gaaagcaatctaagaccacgtgccacctgccttgatttcttgccagggtcgcatgtggga
ctctgcagtggcccctgtgagatggcagagcaacggttctgtgtggactatgccaagcgt
ggcacagccggctgcaaaaaatgcaaagaaaagattgtaaagggcatgtgccgaatcggc
aaagtggtgcccaatcccttttcagagtcagggggtgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaggacctc
acagagctggaaggctgggaagagctggaagataatgagaaagaacagatcagccagcac
attgcagatctgtcttccaaggcagcaaacacaccaaagaagaaagctgttgtccaggct
aagttgacagccactggccaggtgacatctccagtgaaaggtgcctcatttgtcaccaat
accaatccccggaaattttctggcttttcagcgaagcccaacaactctggggaagcccac
tcaatacctacccctaagacaagtctgtcctcaagcaaatgtgaccctaagcacaaggat
tgtctgctacgtgagtttcggaagttgtgtgccatggtggctgaaaatcctagctacaac
acgaagacccagatcatccaggacttccttcagaaaggctcagcaggagatggtttccac
ggtgacgtgtacctaactgtgaagctgttgctgccgggtgttattaagagtgtttacaac
ttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaactcagatgat
atggcacgagacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcag
agcaagtctttccccccagcttccaagagccttcttaccatccaggaggtggatgaattc
ctcctgcggctctccaagctcaccaaggaggatgagcagcaacaggccctgcaggacatc
gcctccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaaacatgatctg
aagatgaactcaggtgcaaagcatgtgttagatgccctagaccctaatgcctatgaagcc
ttcaaagcctcgcgcaacctgcacgatgtggtggagcgggtcctccgcaacgagcaggag
gtgaagaaggagccaggccggaaacgagctctgagtgtccaggcctcactgatgaccccg
gtgcagcccatgctggccgaggcctgcaagtccatcgagtacgcgatgaagaagtgtccg
aatggcatgttctctgagatcaagtatgatggggagcgagtccaggtgcataagaacggg
gactacttcagctacttcagccgcagtctcaagccagtcctgccgcacaaggtggcccac
tttaaggactacatcccccaggctttccccgggggccacagcatgatcttggactctgag
gtgctcctgatcgacaacaagaaaggcaaaccactgcccttcgggactctgggagtgcac
aagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatctacttc
aatgatgtcagcttgatggataggcctctgtttgagcggcggaagtttcttcacgataac
atggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcacaaaagcttct
gacttggctgacatgatcaaccgggtgatccaagaggggttggaagggctggtgctgaag
gacgtgaagggtacatatgagcctggaaagcgtcattggctgaaagtgaagaaggactat
ttgaacgagggggccatggctgacacggctgacctggtggtgcttggggccttctatggg
caagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccaagtagc
cagaagtggtgcacagtcaccaagtgtgcaggaggccacgatgacgcaacgcttgcccgc
ctacagaaggaactggacatggtgaagatcagcaaggatcccagcaagatacccagctgg
ctgaaagtcaataagatctactatcctgacttcatcgttccagacccgaagaaagctgcg
gtgtgggagatcacaggggctgaattctcgaaatctgaggcacacacagctgatgggatc
tccatccgtttccctcgctgcacccaaatccgtgatgataaggattggaagtctgccact
aacctcccccaactcaaggaactgtaccagctctccaaggagcgggcggctttcgccata
gtggccagagatgaggggagctccactacagggggcagcagcggagagaacgagggaatc
tcagggccagctgtgtctcacgaggccccgagaacctcccccaagcagccctccgccagt
gccaagaaggcaggagggaagctgagtagctccaacagcaaaggcggtaatcttcttggt
tctcatcctgagctctctcctgcaggcaacaagctggctgcaaagccttcccctgtgaaa
gtgggagagaagcggaaggctcctgatgagactccatgccaagcaaaggtgctgctggac
atcttcaccggggtgcggctctacctgccgccctccacgccagacttcagccgtctccga
cgctactttgtggcattcgatggggacctggcgcaggaatttgacgtggcctcagccaca
catgtgctgggtagcagggacaagaaccctgaggcccagcaggtcaccccagagtggatc
tgggcctgtatccggaaacggagactggtagctccctgctag
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