Lipotes vexillifer (Yangtze River dolphin): 103089517
Help
Entry
103089517 CDS
T03090
Symbol
PBRM1
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1
KO
K11757
protein polybromo-1
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03082
ATP-dependent chromatin remodeling
lve05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103089517 (PBRM1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
103089517 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lve03021
]
103089517 (PBRM1)
03036 Chromosome and associated proteins [BR:
lve03036
]
103089517 (PBRM1)
Transcription machinery [BR:
lve03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103089517 (PBRM1)
Chromosome and associated proteins [BR:
lve03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
103089517 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
103089517
NCBI-ProteinID:
XP_007451928
UniProt:
A0A340WQZ2
LinkDB
All DBs
Position
Unknown
AA seq
1581 aa
AA seq
DB search
MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTVTEGSSPS
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSVHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMTKSSLRMR
TPSNLAAARLTGPSHSKGSLGEERNPTNKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
LAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFLHLPSKKKYPDY
YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
QAKKKELARRDDIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGR
RLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHY
NEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSKASGISPKKSKYMTPMQQ
KLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQD
IDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQE
LIHNLFVSVMSHQDDEGRCYSDSXXXXXVDPSFPNKPPLTFDIIRKNVENNRYRRLDLFQ
EHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHND
VEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRTYSQDCSFKNSMYHVG
DYVYVEPAEANLQPHIVCIERLWEDSAEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKL
CPENFRDEDVFVCESRYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANADK
GDDEKNTGNSEDSRTEDSFNLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFI
KSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPM
TCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVDD
EIYYFRKPTVPQKEPSPLLEKKIQLLEAKFAELEGGDDDIEEMGEEDSESTPKSAKGSAK
KEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEGMMG
GYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPSGVMNQGVAPMVG
TPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPPGPPVIQQPTTPMFVAPPPKTQRLLHSE
AYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALWR
LRDLMLRDTLNIRQAYNLENL
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgggttccaagagaagaagagctacctccccttccagcagtgtcagtggagactttgat
gatgggcaccattctgtgtccacgccaggcccaagcaggaaaaggaggagactttccaat
cttccgactgtagaccctattgccgtgtgccatgaactctacaacaccatccgagactat
aaggatgagcagggcaggctcctctgtgagctcttcattagggcaccaaagcgaagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaa
ctaaaaatggaagagtatgatgatgttaatctgctgactgctgacttccagttgcttttt
aacaatgcaaaggcctattataagccagattctcctgaatataaagctgcttgcaaactt
tgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagatgatgaa
gatgatgatgaagatgggcaagacaatcaaggcacagtgaccgaaggatcttctccaagt
tacttaaaggagatcctggagcagcttcttgaagccatagttgtagccacaaatccatca
ggacgtctcattagtgaactttttcagaaactgccttctaaagtgcaatatccagactat
tatgcaataattaaggagcctatagacctcaagaccattgcccagaggatacagaatgga
agctacaagagtgttcatgcaatggccaaagatatagatctcctagcaaaaaatgccaaa
acttataatgagcctggttctcaagtattcaaggatgcaaattctattaagaaaatattt
tatatgaaaaaggcagaaattgaacatcatgaaatgactaagtcaagccttcgaatgagg
accccatcaaatttggctgcagccaggctgacaggtccttcgcacagtaaaggcagcctt
ggtgaagagagaaatcccactaacaagtactaccgtaataaacgagcagtccaagggggt
cgtttatcagcaattaccatggcacttcagtatggctcagaaagtgaagaggatgctgct
ttagctgctgcacgttatgaagaaggagagtcggaagcagagagcattacttcatttatg
gatgtttcaaatcctttttatcagctttacgacacagttaggagctgtcggaataaccaa
gggcagctaatagctgaaccttttttgcatttgccttcaaagaaaaaataccctgattat
tatcagcaaattaaaatgcccatatcactacaacagatcagaacaaagctaaagaatcaa
gaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaa
cgctataatgttcccaactcagccatctacaagcgagttctaaaactgcaacaagtcatg
caggcaaagaagaaggagcttgccaggagagatgacattgaggatggagacagcatgatt
tcttcagcaacctctgatactggtagtgccaaaagaaaaagtaaaaagaatattcgaaag
cagcgaatgaaaatcttgttcaatgttgttcttgaagctcgtgagccaggttcaggcaga
agactttgtgatctatttatggttaaaccatccaaaaaggactatcctgattattataaa
atcatcttggagccaatggacttgaaaataattgaacataacatccgcaatgacaaatat
gcaggggaagagggaatgatagaagacatgaagctgatgttccggaatgccaggcactac
aacgaggagggctcccaggtgtacaatgatgcgcacatcctggagaagttactcaaggat
aaaaggaaagagctgggcccactgcctgatgatgatgacatggcttctcccaaactcaaa
ctgagtaaggcaagcggtatttctcctaaaaaatcaaaatatatgactccaatgcagcag
aaactaaatgaagtctatgaagctgtaaagaactatactgataagaggggtcgccgcctc
agtgccatatttctgaggcttccctccagatctgagctgcctgactactatttgaccatt
aaaaaacccatggacatggaaaaaattcgaagccacatgatggccaacaaataccaagat
atagactccatggttgaggacttcgtcatgatgtttaacaatgcctgtacatacaatgag
cccgagtctttgatctacaaagatgcccttgtcctacacaaagtcctgcttgaaactcgg
agagacctagaaggagatgaggactctcatgtcccaaatgtaaccttgctgattcaggag
cttatccataatctttttgtgtcagtcatgagtcatcaggatgatgaaggaagatgctac
agtgattccnncnnnnnnnnnnctgtggatcccagctttccaaacaaacctcctcttact
tttgacataattaggaagaatgttgaaaataatcgctaccggcggctcgatttatttcaa
gaacatatgtttgaagtattggagagggcaagaaggatgaatcggacagattctgaaata
tatgaggatgcggtagaacttcagcagttttttattaaaattcgtgatgagctctgcaaa
aatggagagatccttctttcaccagcactcagctataccacaaaacatttacataatgat
gtggagaaagagaaaaaggaaaaactaccgaaagaaatagaggaagataaactaaaacga
gaagaagaaaaaagagaagctgaaaagagtgaagattcctctggagctgcaggcctctca
ggcttacatcgcacatacagccaggactgcagctttaagaacagtatgtaccatgttgga
gattatgtctatgtggagcctgcagaggccaatctacaaccacatatagtctgtattgag
agactgtgggaagattctgctgaaaaagaagtttttaagagtgactattacaataaagtt
cctgttagtaaaattctaggaaaatgtgtggtcatgtttgttaaggaatactttaaatta
tgcccagaaaactttcgagatgaggatgtttttgtctgtgaatcacggtattctgccaaa
accaaatcttttaagaaaattaaactatggaccatgcccatcagctcagttagatttgtc
cctcgagatgtgcccttgcctgtggtccgagtggcctctgtatttgcaaatgcagataaa
ggggatgatgagaagaatacaggcaactcagaggacagtcgaactgaagacagttttaac
ttggaaaaggagaaagaagatgtccctgtggaaatgtctaacggtgaaccaggttgccac
tactttgagcagctccggtataatgacatgtggctgaaggttggcgactgtgtcttcatc
aagtcccatggcctggtgcgccctcgtgtgggcagaattgaaaaggtatgggtccgagat
ggagctgcatatttttacggccccatcttcattcacccagaagagacggaacacgagccc
acaaaaatgttctacaagaaagaagtgtttctgagtaatctggaagaaacctgccccatg
acatgtattctaggaaagtgtgctgtattgtcattcaaggacttcctctcctgcaggcca
actgaaattccggaaaatgacattctgctttgtgagagccgctacaatgaaagtgacaag
cagatgaagaaattcaagggactgaagaggttttcactctctgctaaagtggtagatgat
gaaatttattacttcagaaaaccgactgttcctcagaaggagccctcacctttattggaa
aagaagatccagttgctagaagctaaatttgctgagttagaaggtggagatgatgatatt
gaagagatgggagaagaggatagtgagtctaccccaaagtctgccaaaggcagtgcaaag
aaggaaggctccaaacggaaaatcaacatgagcggctacatcctgttcagcagtgagatg
agagctgtgattaaggcccagcacccagactactcttttggtgagctcagccgactggtg
gggacagaatggagaaaccttgagacagccaagaaagcagaatatgaaggcatgatgggt
ggctatccgccaggccttccacctttgcagggcccagttgatggccttgttagcatgggc
agcatgcagccacttcaccccggggggcctccaccccaccatcttccgccaggtgtgccc
ggcctcccgggcataccaccatcgggtgtgatgaaccaaggagtggcccctatggtaggg
actccagcaccaggtggaagtccatatggacagcaggtaggtgttttggggcctccaggg
cagcaggcaccacctccatatcctggcccacatccacccggcccccctgtcatacagcag
ccaacaacacccatgtttgtggctcccccaccgaagactcaacggcttctccactcagag
gcctacctaaaatatattgaaggactcagtgctgagtccaacagcattagcaagtgggac
cagaccctagcagcccgaagacgcgatgtccatttgtcaaaagaacaggagagccgactc
ccctctcactggctgaaaagtaaaggggcccacaccaccatggcagacgccctctggcgc
cttcgggatctgatgctccgagacaccctcaatattcgccaagcatacaatctagaaaac
ctttaa
DBGET
integrated database retrieval system
